Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q7641_RS02990 Genome accession   NZ_CP131655
Coordinates   614912..615481 (+) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2010N06-097     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 609912..620481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7641_RS02965 (Q7641_02970) cysE 611125..611772 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  Q7641_RS02970 (Q7641_02975) cysS 611756..613156 (+) 1401 WP_000631973.1 cysteine--tRNA ligase -
  Q7641_RS02975 (Q7641_02980) - 613149..613553 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  Q7641_RS02980 (Q7641_02985) rlmB 613561..614307 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q7641_RS02985 (Q7641_02990) - 614307..614831 (+) 525 WP_000664738.1 NYN domain-containing protein -
  Q7641_RS02990 (Q7641_02995) sigH 614912..615481 (+) 570 WP_000872876.1 RNA polymerase sigma factor Regulator
  Q7641_RS02995 (Q7641_03000) rpmG 615596..615739 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  Q7641_RS03000 (Q7641_03005) secE 615795..615977 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  Q7641_RS03005 (Q7641_03010) nusG 615990..616538 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q7641_RS03010 (Q7641_03015) rplK 616719..617141 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  Q7641_RS03015 (Q7641_03020) rplA 617349..618041 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q7641_RS03020 (Q7641_03025) rplJ 618313..618813 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  Q7641_RS03025 (Q7641_03030) rplL 618856..619224 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  Q7641_RS03030 (Q7641_03035) - 619399..620007 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=863334 Q7641_RS02990 WP_000872876.1 614912..615481(+) (sigH) [Staphylococcus aureus strain 2010N06-097]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=863334 Q7641_RS02990 WP_000872876.1 614912..615481(+) (sigH) [Staphylococcus aureus strain 2010N06-097]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984