Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   Q7647_RS02675 Genome accession   NZ_CP131636
Coordinates   516256..517215 (+) Length   319 a.a.
NCBI ID   WP_050169726.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2016E02-233     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 511256..522215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7647_RS02650 (Q7647_02650) - 511754..512263 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q7647_RS02655 (Q7647_02655) - 512493..513074 (-) 582 WP_003690895.1 superoxide dismutase -
  Q7647_RS02660 (Q7647_02660) dnaB 513237..514643 (+) 1407 WP_071200491.1 replicative DNA helicase -
  Q7647_RS02665 (Q7647_02665) pilH 514951..515613 (+) 663 WP_106167105.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q7647_RS02670 (Q7647_02670) pilI 515645..516259 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Machinery gene
  Q7647_RS02675 (Q7647_02675) pilJ 516256..517215 (+) 960 WP_050169726.1 PilW family protein Machinery gene
  Q7647_RS02680 (Q7647_02680) pilK 517194..517805 (+) 612 WP_012503481.1 pilus assembly protein Machinery gene
  Q7647_RS02685 (Q7647_02685) pilL 517807..518280 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  Q7647_RS02690 (Q7647_02690) - 518350..518658 (-) 309 WP_003706588.1 AzlD family protein -
  Q7647_RS02695 (Q7647_02695) - 518655..519366 (-) 712 Protein_521 AzlC family ABC transporter permease -
  Q7647_RS02700 (Q7647_02700) dut 519532..519984 (+) 453 WP_003701071.1 dUTP diphosphatase -
  Q7647_RS02705 (Q7647_02705) dapC 520056..521243 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  Q7647_RS02710 (Q7647_02710) yaaA 521399..522178 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 319 a.a.        Molecular weight: 35245.19 Da        Isoelectric Point: 9.3781

>NTDB_id=863073 Q7647_RS02675 WP_050169726.1 516256..517215(+) (pilJ) [Neisseria gonorrhoeae strain 2016E02-233]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKMNSTNKVISNGTDNKLIPIAESLNIRYQGFTHRPNALIFQYGIDDVNASADTTV
VSSCAAISKPDKQILNLEDVKKELKIVGQGKEQNGNIARQRHVVNAYAVGRFGNEEGLFRFQLNEKGEWGNPQLLAKKIK
RMRVRYIYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=863073 Q7647_RS02675 WP_050169726.1 516256..517215(+) (pilJ) [Neisseria gonorrhoeae strain 2016E02-233]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAT
GAACAGTACAAATAAAGTTATCTCCAACGGTACAGATAATAAACTTATCCCCATAGCGGAATCTTTAAATATCAGATATC
AGGGTTTTACCCATCGCCCTAACGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTC
GTCAGCAGCTGTGCCGCAATATCGAAACCGGACAAGCAAATCCTTAATTTAGAAGATGTAAAAAAAGAATTGAAGATTGT
GGGTCAGGGTAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCA
ATGAGGAAGGTTTGTTCCGCTTCCAATTGAATGAAAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAA
CGTATGAGAGTGCGGTATATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATAC
GGATAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTT
CTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

86.52

100

0.865