NTDB

Overview

Name	endA	Type	Machinery gene
Locus tag	WDV79_RS01025	Genome accession	NZ_CP147731
Coordinates	204180..204965 (+)	Length	261 a.a.
NCBI ID	WP_000825431.1	Uniprot ID	Q8E0P2
Organism	Streptococcus agalactiae strain SagR266
Function	cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 199180..209965

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WDV79_RS00995 (WDV79_00995)	-	200297..200740 (+)	444	WP_001048166.1	hypothetical protein	-
WDV79_RS01000 (WDV79_01000)	-	200825..201091 (+)	267	WP_001865676.1	hypothetical protein	-
WDV79_RS01005 (WDV79_01005)	-	201192..201320 (+)	129	WP_000962057.1	hypothetical protein	-
WDV79_RS01010 (WDV79_01010)	-	201329..201649 (+)	321	WP_001865677.1	hypothetical protein	-
WDV79_RS01015 (WDV79_01015)	-	201746..202417 (+)	672	WP_000891268.1	ABC transporter ATP-binding protein	-
WDV79_RS01020 (WDV79_01020)	-	202474..203919 (-)	1446	WP_000750933.1	FAD/NAD(P)-binding protein	-
WDV79_RS01025 (WDV79_01025)	endA	204180..204965 (+)	786	WP_000825431.1	DNA/RNA non-specific endonuclease	Machinery gene
WDV79_RS01030 (WDV79_01030)	-	205043..205681 (-)	639	WP_085318964.1	VTT domain-containing protein	-
WDV79_RS01035 (WDV79_01035)	-	205898..206554 (+)	657	WP_000121094.1	ATP-binding cassette domain-containing protein	-
WDV79_RS01040 (WDV79_01040)	fetB	206551..207324 (+)	774	WP_000012390.1	iron export ABC transporter permease subunit FetB	-
WDV79_RS01045 (WDV79_01045)	-	207488..208306 (+)	819	WP_000601007.1	hypothetical protein	-
WDV79_RS01050 (WDV79_01050)	-	208343..209227 (-)	885	WP_000354840.1	LysR family transcriptional regulator	-
WDV79_RS01055 (WDV79_01055)	-	209420..209926 (+)	507	Protein_209	PTS sugar transporter subunit IIC	-

Sequence

Protein

Download Length: 261 a.a. Molecular weight: 29424.86 Da Isoelectric Point: 8.9989

                                >NTDB_id=862831 WDV79_RS01025 WP_000825431.1 204180..204965(+) (endA) [Streptococcus agalactiae strain SagR266]

MKRLHKLFITVIATLGMLGVMTFGLPTQPQNVTPIVHADVNSSVDTSQEFQNNLKNAIGNLPFQYVNGIYELNNNQTNLN

ADVNVKAYVQNTIDNQQRLSTANAMLDRTIRQYQNRRDTTLPDANWKPLGWHQVATNDHYGHAVDKGHLIAYALAGNFKG

WDASVSNPQNVVTQTAHSNQSNQKINRGQNYYESLVRKAVDQNKRVRYRVTPLYRNDTDLVPFAMHLEAKSQDGTLEFNV

AIPNTQASYTMDYATGEITLN

Nucleotide

Download Length: 786 bp

                                >NTDB_id=862831 WDV79_RS01025 WP_000825431.1 204180..204965(+) (endA) [Streptococcus agalactiae strain SagR266]

ATGAAAAGATTACATAAACTGTTTATAACCGTAATTGCTACATTAGGTATGTTGGGGGTAATGACCTTTGGTCTTCCAAC

GCAGCCGCAAAACGTAACGCCGATAGTACATGCTGATGTCAATTCATCTGTTGATACGAGCCAGGAATTTCAAAATAATT

TAAAAAATGCTATTGGTAACCTACCATTTCAATATGTTAATGGTATTTATGAATTAAATAATAATCAGACAAATTTAAAT

GCTGATGTCAATGTTAAAGCGTATGTTCAAAATACAATTGACAATCAACAAAGACTATCAACTGCTAATGCAATGCTTGA

TAGAACCATTCGTCAATATCAAAATCGCAGAGATACCACTCTTCCCGATGCAAATTGGAAACCATTAGGTTGGCATCAAG

TAGCTACTAATGACCATTATGGACATGCAGTCGACAAGGGGCATTTAATTGCCTATGCTTTAGCTGGAAATTTCAAAGGT

TGGGATGCTTCCGTGTCAAATCCTCAAAATGTTGTCACACAAACAGCTCATTCCAACCAATCAAATCAAAAAATCAATCG

TGGACAAAATTATTATGAAAGCTTAGTTCGTAAGGCGGTTGACCAAAACAAACGTGTTCGTTACCGTGTAACTCCATTGT

ACCGTAATGATACTGATTTAGTTCCATTTGCAATGCACCTAGAAGCTAAATCACAAGATGGCACATTAGAATTTAATGTT

GCTATTCCAAACACACAAGCATCATACACTATGGATTATGCAACAGGAGAAATAACACTAAATTAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(77-235)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q8E0P2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
endA	Streptococcus pneumoniae Rx1	51.515	75.862	0.391
endA	Streptococcus pneumoniae D39	51.515	75.862	0.391
endA	Streptococcus pneumoniae R6	51.515	75.862	0.391
endA	Streptococcus pneumoniae TIGR4	51.515	75.862	0.391

Detailed information NTG0862831