Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q5709_RS13375 Genome accession   NZ_CP131483
Coordinates   2809787..2810230 (-) Length   147 a.a.
NCBI ID   WP_034430461.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain MC-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2804787..2815230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5709_RS13345 (Q5709_13350) - 2805356..2806342 (+) 987 WP_005018195.1 esterase/lipase family protein -
  Q5709_RS13350 (Q5709_13355) - 2806444..2807415 (+) 972 WP_005018194.1 lipase family alpha/beta hydrolase -
  Q5709_RS13355 (Q5709_13360) rplS 2807475..2807849 (-) 375 WP_005018193.1 50S ribosomal protein L19 -
  Q5709_RS13360 (Q5709_13365) trmD 2808024..2808773 (-) 750 WP_005405233.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  Q5709_RS13365 (Q5709_13370) rimM 2808817..2809365 (-) 549 WP_005405234.1 ribosome maturation factor RimM -
  Q5709_RS13370 (Q5709_13375) rpsP 2809386..2809643 (-) 258 WP_005018185.1 30S ribosomal protein S16 -
  Q5709_RS13375 (Q5709_13380) pilE 2809787..2810230 (-) 444 WP_034430461.1 type IV pilin protein Machinery gene
  Q5709_RS13380 (Q5709_13385) - 2810217..2810702 (-) 486 WP_373867495.1 pilin -
  Q5709_RS13385 (Q5709_13390) - 2810767..2812020 (-) 1254 WP_416393898.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15904.14 Da        Isoelectric Point: 9.6271

>NTDB_id=862650 Q5709_RS13375 WP_034430461.1 2809787..2810230(-) (pilE) [Acinetobacter radioresistens strain MC-14]
MKVGKYNGFTLIEVMIVVAIIGILAAIAYPSYSQYIIRTKRTDAQSEMLQVAQRMQTYRAANNTFAGATINTVYGGSVIP
KQGTALYNLTFSPSPTTANEWTLIATPISSTSQANDGVICLNHQGQKFWVKGASACALSNTSNWDGR

Nucleotide


Download         Length: 444 bp        

>NTDB_id=862650 Q5709_RS13375 WP_034430461.1 2809787..2810230(-) (pilE) [Acinetobacter radioresistens strain MC-14]
ATGAAAGTTGGTAAATATAATGGTTTTACGCTTATAGAAGTTATGATTGTAGTAGCTATTATTGGAATTTTAGCAGCGAT
TGCCTATCCTTCTTATAGCCAATATATTATAAGAACCAAACGTACAGATGCACAAAGTGAAATGTTGCAAGTTGCACAGC
GTATGCAAACCTATAGAGCAGCTAATAATACGTTCGCTGGTGCTACAATAAATACAGTTTATGGAGGCAGCGTGATCCCG
AAACAGGGAACAGCGCTTTATAACTTAACTTTTAGTCCCTCCCCGACCACAGCAAATGAATGGACATTAATAGCGACACC
AATTAGCAGCACATCTCAGGCTAATGATGGGGTTATTTGTCTGAATCACCAAGGCCAAAAATTCTGGGTCAAAGGTGCCA
GTGCCTGTGCTTTATCTAATACCTCTAACTGGGACGGCCGCTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(30-120)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

58.865

95.918

0.565
  comF Acinetobacter baylyi ADP1

53.901

95.918

0.517