Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Q6H37_RS11800 Genome accession   NZ_CP131467
Coordinates   2504078..2505940 (+) Length   620 a.a.
NCBI ID   WP_318742120.1    Uniprot ID   A0AAU0P0U7
Organism   Clostridium sp. JS66     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2499078..2510940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6H37_RS11785 (Q6H37_11785) - 2499777..2500925 (-) 1149 WP_318742117.1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain -
  Q6H37_RS11790 (Q6H37_11790) - 2501142..2501585 (-) 444 WP_318742118.1 MarR family transcriptional regulator -
  Q6H37_RS11795 (Q6H37_11795) - 2501829..2504081 (+) 2253 WP_318742119.1 ABC transporter ATP-binding protein -
  Q6H37_RS11800 (Q6H37_11800) rcrQ 2504078..2505940 (+) 1863 WP_318742120.1 ABC transporter ATP-binding protein Regulator
  Q6H37_RS11805 (Q6H37_11805) - 2506197..2506355 (+) 159 WP_007061385.1 zinc-ribbon domain-containing protein -
  Q6H37_RS11810 (Q6H37_11810) - 2506663..2507577 (+) 915 WP_318742121.1 phosphate ABC transporter substrate-binding protein -
  Q6H37_RS11815 (Q6H37_11815) pstC 2507637..2508506 (+) 870 WP_318742122.1 phosphate ABC transporter permease subunit PstC -
  Q6H37_RS11820 (Q6H37_11820) pstA 2508520..2509350 (+) 831 WP_318742123.1 phosphate ABC transporter permease PstA -
  Q6H37_RS11825 (Q6H37_11825) - 2509353..2510102 (+) 750 WP_318742124.1 phosphate ABC transporter ATP-binding protein -
  Q6H37_RS11830 (Q6H37_11830) - 2510136..2510606 (+) 471 WP_318742125.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 620 a.a.        Molecular weight: 69165.47 Da        Isoelectric Point: 9.2534

>NTDB_id=862495 Q6H37_RS11800 WP_318742120.1 2504078..2505940(+) (rcrQ) [Clostridium sp. JS66]
MSDRKIENKTQGGFGKGHMGGIGNGEKAKNFKATMNKLLQYLKPYRLSIIIVIIFAIGSAAFSIIGPKILGKATTKLFEG
LVNKVMGVKGATIDFSYIGYIVILLLALYIVSAVFSIIQGYIVSGVAQKVSYNFRKEIDEKINRMPLKYFDKKTHGEVLS
RITNDVDTVSQSLNQSMSQIITSVVTIIGVLIMMLSISWQMTLVALLILPVSMVLITGVIKKSQKYFKSQQEYLGHVNGQ
VEEIYSGHNIVKAFNREEEAVKNFEEVNDILYSSAWKSQFLSGMMMPIMTFIGNIGYVAVSILGGWLAIKKTIEVGDILS
FVQYVRSFTQPISQVAQIANVLQSTAAAAERVFEFLEEEEEVKESENPVKLQEVKGEVTFKDVRFGYNSDKMIINDFRAH
IKPGQKVAIVGPTGAGKTTIVKLLMRFYDLNGGSILIDGHDIKDFTREDLRSMFGMVLQDTWLFNGEIMENIRYGKLDAL
DKEVVKAAKSAHVHHFVKTLPKGYNMELNEEASNVSQGQKQLLTIARALLKDPKILILDEATSSIDTRTEVLIQKAMENL
MKGRTSFIIAHRLSTIRDADLILVMKDGDIVEQGSHQELLKANGFYASLYNSQFENAYAS

Nucleotide


Download         Length: 1863 bp        

>NTDB_id=862495 Q6H37_RS11800 WP_318742120.1 2504078..2505940(+) (rcrQ) [Clostridium sp. JS66]
ATGAGTGATAGAAAAATAGAAAATAAGACACAAGGTGGCTTTGGCAAAGGTCATATGGGTGGTATAGGAAATGGTGAAAA
GGCAAAGAATTTCAAAGCTACTATGAATAAATTACTGCAATATTTAAAACCATATAGGCTATCAATAATTATTGTAATTA
TTTTTGCAATAGGTAGTGCAGCTTTTTCTATAATAGGTCCCAAAATTTTAGGTAAGGCAACAACCAAGCTCTTTGAAGGA
TTGGTAAATAAGGTAATGGGAGTAAAAGGTGCAACCATTGACTTTAGCTATATAGGGTATATTGTAATTTTACTTCTTGC
ATTATATATTGTTAGTGCTGTGTTCTCAATTATACAAGGATATATAGTTTCAGGAGTAGCACAAAAGGTATCTTATAATT
TCAGAAAGGAAATTGATGAAAAGATTAATCGTATGCCGCTTAAGTACTTTGATAAGAAGACACATGGAGAAGTGCTGTCC
AGGATTACTAATGATGTAGATACTGTGAGCCAATCATTAAATCAAAGTATGTCACAAATAATAACGTCAGTTGTTACAAT
AATAGGTGTATTAATTATGATGTTATCGATAAGTTGGCAAATGACATTAGTTGCACTTTTAATACTGCCAGTATCAATGG
TTCTAATCACAGGGGTAATAAAAAAATCACAAAAGTATTTTAAATCTCAACAGGAATATTTAGGACATGTTAATGGACAA
GTAGAAGAAATTTATAGTGGTCACAATATAGTAAAAGCCTTTAATAGAGAAGAGGAAGCGGTTAAAAATTTTGAAGAGGT
TAATGATATACTTTATAGTTCAGCATGGAAATCTCAATTTTTATCTGGAATGATGATGCCTATTATGACTTTCATTGGTA
ATATAGGTTATGTAGCTGTATCTATTTTAGGTGGATGGCTTGCAATAAAGAAAACTATTGAAGTTGGGGATATTTTATCA
TTTGTTCAATATGTTAGAAGTTTTACACAGCCTATATCTCAAGTAGCTCAAATAGCTAATGTACTTCAATCGACAGCAGC
TGCTGCAGAAAGGGTTTTTGAATTTTTAGAAGAGGAAGAAGAAGTCAAAGAGTCAGAAAATCCAGTTAAACTTCAAGAGG
TTAAAGGAGAAGTTACTTTTAAGGATGTTCGATTTGGATATAACTCTGATAAAATGATAATAAATGATTTCAGGGCTCAT
ATTAAACCTGGTCAAAAGGTAGCCATAGTAGGACCAACTGGAGCAGGAAAGACCACAATAGTTAAGCTTTTAATGCGTTT
TTATGATTTAAATGGTGGATCTATATTAATTGATGGACATGATATAAAAGATTTTACCAGAGAAGATTTGCGTAGTATGT
TTGGTATGGTACTTCAAGACACTTGGCTATTTAATGGTGAAATAATGGAGAATATACGTTATGGTAAACTTGATGCTTTG
GATAAAGAGGTTGTTAAAGCAGCTAAGTCAGCTCATGTTCACCATTTTGTAAAAACTTTGCCAAAGGGATATAATATGGA
ATTAAATGAAGAAGCAAGCAATGTATCTCAAGGGCAAAAGCAGCTATTAACCATTGCTCGTGCACTTTTAAAAGATCCTA
AAATATTAATACTTGATGAAGCTACAAGTTCTATTGATACTCGTACAGAGGTGCTTATTCAAAAGGCTATGGAAAATCTA
ATGAAAGGAAGAACAAGCTTTATTATTGCTCATAGATTATCAACAATACGGGATGCAGATTTGATACTTGTAATGAAGGA
TGGAGATATTGTAGAACAAGGTAGTCATCAGGAATTATTAAAGGCAAATGGTTTTTATGCTTCACTTTACAATAGTCAAT
TTGAAAATGCGTATGCTTCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(49-331)

ABC transporter (ABC_tran)

(395-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.211

94.839

0.495