Detailed information    

insolico Bioinformatically predicted

Overview


Name   ctsG   Type   Machinery gene
Locus tag   Q7258_RS06610 Genome accession   NZ_CP131444
Coordinates   1308656..1309171 (-) Length   171 a.a.
NCBI ID   WP_052794242.1    Uniprot ID   A0AAN3QXH2
Organism   Campylobacter jejuni strain S27     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1303656..1314171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7258_RS06595 (Q7258_06595) - 1303760..1305577 (-) 1818 WP_305091278.1 motility associated factor glycosyltransferase family protein -
  Q7258_RS06600 (Q7258_06600) - 1305574..1307397 (-) 1824 WP_305091279.1 motility associated factor glycosyltransferase family protein -
  Q7258_RS06605 (Q7258_06605) - 1307407..1308656 (-) 1250 Protein_1283 DUF2920 family protein -
  Q7258_RS06610 (Q7258_06610) ctsG 1308656..1309171 (-) 516 WP_052794242.1 type II secretion system protein Machinery gene
  Q7258_RS06615 (Q7258_06615) tsaD 1309172..1310179 (-) 1008 WP_305091280.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  Q7258_RS06620 (Q7258_06620) - 1310176..1311570 (-) 1395 WP_052777897.1 M99 family carboxypeptidase catalytic domain-containing protein -
  Q7258_RS06625 (Q7258_06625) dxr 1311572..1312642 (-) 1071 WP_052776152.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  Q7258_RS06630 (Q7258_06630) cdsA 1312639..1313364 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  Q7258_RS06635 (Q7258_06635) - 1313373..1313711 (-) 339 WP_022552380.1 hypothetical protein -

Sequence


Protein


Download         Length: 171 a.a.        Molecular weight: 18650.51 Da        Isoelectric Point: 6.4693

>NTDB_id=862458 Q7258_RS06610 WP_052794242.1 1308656..1309171(-) (ctsG) [Campylobacter jejuni strain S27]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=862458 Q7258_RS06610 WP_052794242.1 1308656..1309171(-) (ctsG) [Campylobacter jejuni strain S27]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936