Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   Q7259_RS07875 Genome accession   NZ_CP131442
Coordinates   1513286..1513597 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain S33     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1508286..1518597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7259_RS07855 (Q7259_07855) ctsE 1509155..1510714 (-) 1560 WP_032600597.1 GspE/PulE family protein Machinery gene
  Q7259_RS07860 (Q7259_07860) ctsX 1510704..1511291 (-) 588 WP_002851370.1 membrane protein Machinery gene
  Q7259_RS07865 (Q7259_07865) ctsP 1511295..1511903 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  Q7259_RS07870 (Q7259_07870) ctsD 1511896..1513308 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  Q7259_RS07875 (Q7259_07875) ctsR 1513286..1513597 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  Q7259_RS07880 (Q7259_07880) nifJ 1513621..1517181 (-) 3561 WP_002886267.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  Q7259_RS07885 (Q7259_07885) - 1517279..1517917 (-) 639 WP_002886266.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=862440 Q7259_RS07875 WP_002855438.1 1513286..1513597(-) (ctsR) [Campylobacter jejuni strain S33]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=862440 Q7259_RS07875 WP_002855438.1 1513286..1513597(-) (ctsR) [Campylobacter jejuni strain S33]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1