Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   Q7259_RS07225 Genome accession   NZ_CP131442
Coordinates   1376697..1377212 (-) Length   171 a.a.
NCBI ID   WP_002801535.1    Uniprot ID   -
Organism   Campylobacter jejuni strain S33     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1371697..1382212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7259_RS07210 (Q7259_07210) - 1371810..1373627 (-) 1818 WP_305113288.1 motility associated factor glycosyltransferase family protein -
  Q7259_RS07215 (Q7259_07215) - 1373624..1375447 (-) 1824 WP_305113289.1 motility associated factor glycosyltransferase family protein -
  Q7259_RS07220 (Q7259_07220) - 1375457..1376697 (-) 1241 Protein_1404 DUF2920 family protein -
  Q7259_RS07225 (Q7259_07225) ctsG 1376697..1377212 (-) 516 WP_002801535.1 type II secretion system protein Machinery gene
  Q7259_RS07230 (Q7259_07230) tsaD 1377216..1378223 (-) 1008 WP_002788427.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  Q7259_RS07235 (Q7259_07235) - 1378220..1379614 (-) 1395 WP_002797421.1 M99 family carboxypeptidase catalytic domain-containing protein -
  Q7259_RS07240 (Q7259_07240) dxr 1379611..1380687 (-) 1077 WP_305113290.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  Q7259_RS07245 (Q7259_07245) cdsA 1380684..1381409 (-) 726 WP_305113291.1 phosphatidate cytidylyltransferase -
  Q7259_RS07250 (Q7259_07250) - 1381418..1381756 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18996.99 Da        Isoelectric Point: 8.4861

>NTDB_id=862431 Q7259_RS07225 WP_002801535.1 1376697..1377212(-) (ctsG) [Campylobacter jejuni strain S33]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLNTMNFMSNVSGVENVDLNN
FIGIKEVNFRVGEDKECIKLIFIDRNDFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=862431 Q7259_RS07225 WP_002801535.1 1376697..1377212(-) (ctsG) [Campylobacter jejuni strain S33]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAACACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTAACAAT
TTTATAGGCATAAAAGAAGTAAATTTTAGGGTCGGAGAGGATAAAGAGTGTATAAAACTGATTTTCATCGATAGAAATGA
TTTTGTACTGATGGGAATTTCTAGTAATGAAGCAAGCAAAAATGCCATAATCAATATAGCCAATAACCCCAAACAAGAAT
TTCAAAACTTAGATTTTACAAGCAATTCAAAAAATAAAGCTTGCGTGGCACTAAGTAAAAATGAGAATTTTAAAAATTTA
GCTAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

78.363

100

0.784