Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Q6378_RS02680 Genome accession   NZ_CP130889
Coordinates   520498..521163 (-) Length   221 a.a.
NCBI ID   WP_047918678.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ209649     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515498..526163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6378_RS02645 (Q6378_02645) dut 516110..516562 (-) 453 WP_103195211.1 dUTP diphosphatase -
  Q6378_RS02650 (Q6378_02650) - 516728..517435 (+) 708 Protein_518 AzlC family ABC transporter permease -
  Q6378_RS02655 (Q6378_02655) - 517432..517740 (+) 309 WP_010951048.1 AzlD family protein -
  Q6378_RS02660 (Q6378_02660) pilL 517810..518286 (-) 477 WP_203004379.1 PilX family type IV pilin Machinery gene
  Q6378_RS02665 (Q6378_02665) pilK 518288..518899 (-) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6378_RS02670 (Q6378_02670) pilJ 518878..519858 (-) 981 WP_010951046.1 PilW family protein Machinery gene
  Q6378_RS02675 (Q6378_02675) pilV 519855..520466 (-) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  Q6378_RS02680 (Q6378_02680) pilH 520498..521163 (-) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6378_RS02685 (Q6378_02685) dnaB 521318..522724 (-) 1407 WP_003690896.1 replicative DNA helicase -
  Q6378_RS02690 (Q6378_02690) - 522888..523468 (+) 581 Protein_526 superoxide dismutase -
  Q6378_RS02695 (Q6378_02695) - 523698..524207 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q6378_RS02700 (Q6378_02700) - 524537..524869 (-) 333 WP_003687908.1 hypothetical protein -
  Q6378_RS02705 (Q6378_02705) cysT 525055..525893 (+) 839 Protein_529 sulfate ABC transporter permease subunit CysT -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.96 Da        Isoelectric Point: 8.6140

>NTDB_id=861586 Q6378_RS02680 WP_047918678.1 520498..521163(-) (pilH) [Neisseria gonorrhoeae strain NJ209649]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDFGKKEQGMLAFGDKNDNKAYDGDAADVFLRNVVLNDDIKDKRINYTFNHIAFGSSQPTADRVVWTFNQNGTFGYTK
DQHLASTSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=861586 Q6378_RS02680 WP_047918678.1 520498..521163(-) (pilH) [Neisseria gonorrhoeae strain NJ209649]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTGCAAGCACATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.878

100

0.869