Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q6357_RS17235 Genome accession   NZ_CP130888
Coordinates   3360737..3361516 (-) Length   259 a.a.
NCBI ID   WP_041108981.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 28M1-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3355737..3366516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6357_RS17205 (Q6357_17205) fliH 3355848..3356612 (-) 765 WP_017367245.1 flagellar assembly protein FliH -
  Q6357_RS17210 (Q6357_17210) fliG 3356605..3357621 (-) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  Q6357_RS17215 (Q6357_17215) fliF 3357633..3359225 (-) 1593 WP_024720350.1 flagellar basal-body MS-ring/collar protein FliF -
  Q6357_RS17220 (Q6357_17220) fliE 3359276..3359593 (-) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  Q6357_RS17225 (Q6357_17225) flgC 3359605..3360057 (-) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  Q6357_RS17230 (Q6357_17230) flgB 3360057..3360446 (-) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  Q6357_RS17235 (Q6357_17235) codY 3360737..3361516 (-) 780 WP_041108981.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q6357_RS17240 (Q6357_17240) hslU 3361551..3362951 (-) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  Q6357_RS17245 (Q6357_17245) hslV 3362968..3363513 (-) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  Q6357_RS17250 (Q6357_17250) xerC 3363528..3364445 (-) 918 WP_039166693.1 tyrosine recombinase XerC -
  Q6357_RS17255 (Q6357_17255) trmFO 3364508..3365812 (-) 1305 WP_159159620.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29003.26 Da        Isoelectric Point: 4.7176

>NTDB_id=861556 Q6357_RS17235 WP_041108981.1 3360737..3361516(-) (codY) [Bacillus altitudinis strain 28M1-1]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=861556 Q6357_RS17235 WP_041108981.1 3360737..3361516(-) (codY) [Bacillus altitudinis strain 28M1-1]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTGATCCTTTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTAGGGATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGTTCTCTTTCATATAGTGAGCTTGAGGCGAT
TGAGCATATCTTTGAAGAACTTGATGGCAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCCCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.638

98.069

0.467