Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q5H80_RS21100 Genome accession   NZ_CP130748
Coordinates   124337..125050 (-) Length   237 a.a.
NCBI ID   WP_369809702.1    Uniprot ID   -
Organism   Vibrio sp. SNU_ST1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 119337..130050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS00560 (Q5H80_00560) - 120476..120958 (+) 483 WP_304566293.1 type II secretion system protein M -
  Q5H80_RS00565 (Q5H80_00565) - 120966..121745 (+) 780 WP_304566294.1 type II secretion system protein N -
  Q5H80_RS00570 (Q5H80_00570) cysQ 121899..122726 (-) 828 WP_009848015.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  Q5H80_RS00575 (Q5H80_00575) nudE 122763..123314 (-) 552 WP_304566298.1 ADP compounds hydrolase NudE -
  Q5H80_RS00580 (Q5H80_00580) nfuA 123643..124227 (-) 585 WP_304566300.1 Fe-S biogenesis protein NfuA -
  Q5H80_RS21100 comF 124337..125050 (-) 714 WP_369809702.1 ComF family protein Machinery gene
  Q5H80_RS00590 (Q5H80_00590) bioH 125144..125920 (+) 777 WP_304566304.1 pimeloyl-ACP methyl ester esterase BioH -
  Q5H80_RS00595 (Q5H80_00595) - 126260..126733 (+) 474 WP_304566306.1 ATP-dependent Lon protease -
  Q5H80_RS00600 (Q5H80_00600) - 126985..129315 (-) 2331 WP_304566308.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27240.72 Da        Isoelectric Point: 9.4460

>NTDB_id=861323 Q5H80_RS21100 WP_369809702.1 124337..125050(-) (comF) [Vibrio sp. SNU_ST1]
MLSDWLQKHTPRLVTPQCHLCKLDKLPDDAHPRWCNSCLKLFEPVPRCQRCGLKTLITVKQCGQCLSQPPPWHRLYCVGD
YTFPTAGYIQQMKYADKFWFARDLSKLLASRIEHPASMITSVPLHWRRYIHRGFNQSQLLANYTAQEIGVKDEVLFRRIR
STASQQGLTKSTRLHNLKSAFALRKQYVQGNLPSHIAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=861323 Q5H80_RS21100 WP_369809702.1 124337..125050(-) (comF) [Vibrio sp. SNU_ST1]
ATGTTATCCGATTGGCTACAAAAACACACACCGCGTCTGGTCACACCTCAATGCCACCTGTGCAAGCTAGATAAGCTTCC
CGACGATGCTCACCCTAGATGGTGCAATTCTTGTCTCAAACTCTTTGAGCCAGTTCCTCGCTGCCAACGATGTGGCTTAA
AAACACTGATCACAGTAAAGCAGTGCGGGCAATGTTTATCACAGCCTCCACCTTGGCATCGTCTCTATTGTGTAGGGGAC
TACACCTTTCCAACGGCAGGTTATATTCAACAAATGAAGTACGCCGATAAGTTTTGGTTTGCACGCGATCTGTCAAAGCT
ATTGGCTTCACGTATCGAGCATCCTGCTTCGATGATCACCAGTGTCCCTTTGCATTGGCGTCGATATATTCATCGTGGCT
TTAATCAAAGTCAGCTGCTCGCTAATTACACAGCTCAAGAAATTGGCGTTAAAGATGAGGTGCTGTTCCGTCGAATTCGC
TCAACAGCCTCTCAGCAAGGGCTAACTAAATCCACACGATTACACAATCTAAAGAGTGCTTTTGCGCTTCGAAAACAATA
TGTTCAAGGAAATCTTCCCTCTCACATCGCGATAATTGATGATGTTGTAACCACTGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTAGGTGTGAAAAGGATTGATATTTACTGTATCTGCCGCACTCCTGAGCCCTCTGGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(194-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.085

99.578

0.549
  comF Vibrio campbellii strain DS40M4

48.571

100

0.502