Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q4437_RS00680 Genome accession   NZ_CP130651
Coordinates   148964..149689 (-) Length   241 a.a.
NCBI ID   WP_029559173.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain HZ     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143964..154689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4437_RS00655 (Q4437_00655) - 145083..145574 (+) 492 WP_005458943.1 type II secretion system protein M -
  Q4437_RS00660 (Q4437_00660) - 145576..146337 (+) 762 WP_005459010.1 type II secretion system protein N -
  Q4437_RS00665 (Q4437_00665) cysQ 146623..147450 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  Q4437_RS00670 (Q4437_00670) nudE 147492..148061 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  Q4437_RS00675 (Q4437_00675) nfuA 148282..148866 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  Q4437_RS00680 (Q4437_00680) comF 148964..149689 (-) 726 WP_029559173.1 amidophosphoribosyltransferase Machinery gene
  Q4437_RS00685 (Q4437_00685) bioH 149774..150541 (+) 768 WP_005489494.1 pimeloyl-ACP methyl ester esterase BioH -
  Q4437_RS00690 (Q4437_00690) - 150665..151129 (+) 465 WP_005459035.1 hypothetical protein -
  Q4437_RS00695 (Q4437_00695) - 151265..153586 (-) 2322 WP_005478620.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27712.87 Da        Isoelectric Point: 9.1620

>NTDB_id=860895 Q4437_RS00680 WP_029559173.1 148964..149689(-) (comF) [Vibrio parahaemolyticus strain HZ]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSGILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=860895 Q4437_RS00680 WP_029559173.1 148964..149689(-) (comF) [Vibrio parahaemolyticus strain HZ]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGACTTTCCGCTATCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGGCATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

48.739

98.755

0.481