Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   QAD56_RS07320 Genome accession   NZ_CP130625
Coordinates   1525702..1525965 (-) Length   87 a.a.
NCBI ID   WP_000584942.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS08     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1520702..1530965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD56_RS07305 (QAD56_07285) - 1521676..1523016 (-) 1341 WP_220881490.1 hypothetical protein -
  QAD56_RS07315 (QAD56_07295) comB4 1523337..1525700 (-) 2364 WP_373930683.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAD56_RS07320 (QAD56_07300) comB3 1525702..1525965 (-) 264 WP_000584942.1 hypothetical protein Machinery gene
  QAD56_RS07325 (QAD56_07305) comB2 1525965..1526246 (-) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  QAD56_RS07330 (QAD56_07310) - 1526391..1527218 (-) 828 WP_373930689.1 DUF5718 family protein -
  QAD56_RS07335 (QAD56_07315) - 1527307..1528359 (-) 1053 WP_373930691.1 7-cyano-7-deazaguanine synthase -
  QAD56_RS07340 (QAD56_07320) dnaG 1528356..1530035 (-) 1680 WP_373930693.1 DNA primase -
  QAD56_RS07345 (QAD56_07325) groES 1530321..1530677 (+) 357 WP_000671947.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10062.15 Da        Isoelectric Point: 9.5507

>NTDB_id=860769 QAD56_RS07320 WP_000584942.1 1525702..1525965(-) (comB3) [Helicobacter pylori strain BS08]
MIILSASVKNLREISVKEKFLWLNAKSYLISIFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=860769 QAD56_RS07320 WP_000584942.1 1525702..1525965(-) (comB3) [Helicobacter pylori strain BS08]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTATTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966