Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q3Y59_RS08110 Genome accession   NZ_CP130608
Coordinates   1608808..1609587 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain XDY66     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603808..1614587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y59_RS08090 (Q3Y59_08090) trmFO 1604495..1605802 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  Q3Y59_RS08095 (Q3Y59_08095) xerC 1605872..1606789 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  Q3Y59_RS08100 (Q3Y59_08100) hslV 1606805..1607350 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  Q3Y59_RS08105 (Q3Y59_08105) hslU 1607358..1608770 (+) 1413 WP_254900101.1 HslU--HslV peptidase ATPase subunit -
  Q3Y59_RS08110 (Q3Y59_08110) codY 1608808..1609587 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q3Y59_RS08115 (Q3Y59_08115) flgB 1609941..1610330 (+) 390 WP_303303909.1 flagellar basal body rod protein FlgB -
  Q3Y59_RS08120 (Q3Y59_08120) flgC 1610330..1610782 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  Q3Y59_RS08125 (Q3Y59_08125) fliE 1610793..1611113 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  Q3Y59_RS08130 (Q3Y59_08130) fliF 1611156..1612766 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  Q3Y59_RS08135 (Q3Y59_08135) fliG 1612779..1613795 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  Q3Y59_RS08140 (Q3Y59_08140) fliH 1613788..1614543 (+) 756 WP_015388237.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=860587 Q3Y59_RS08110 WP_003154263.1 1608808..1609587(+) (codY) [Bacillus velezensis strain XDY66]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=860587 Q3Y59_RS08110 WP_003154263.1 1608808..1609587(+) (codY) [Bacillus velezensis strain XDY66]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471