Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   WBG99_RS10260 Genome accession   NZ_CP147520
Coordinates   2535564..2536205 (+) Length   213 a.a.
NCBI ID   WP_338896037.1    Uniprot ID   -
Organism   Streptomyces sp. TG1A-60     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2530564..2541205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 2535564..2536205 (+) 642 - - Regulator

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22712.25 Da        Isoelectric Point: 4.7322

>NTDB_id=859709 WBG99_RS10260 WP_338896037.1 2535564..2536205(+) (vraR) [Streptomyces sp. TG1A-60]
MIRVLVAEDQSAVRAGLVLILRSAPDIEVVGEAADGEQAVALARELRPDLVLMDVQMPRLDGVSATRQVVAEDLADVLVL
TTFDLDEYVFGALRAGAAGFLLKDAEAKDLITAVRTVGRGEGLIAPAVTRRLIAEFAGGPVREPTADPSVLGSLTRRERE
VLSCLGKGLANAEIAQRLDMAEATVKTHVSRLLGKLDLRNRVQAAVLAQEWGV

Nucleotide


Download         Length: 642 bp        

>NTDB_id=859709 WBG99_RS10260 WP_338896037.1 2535564..2536205(+) (vraR) [Streptomyces sp. TG1A-60]
ATGATCCGTGTGCTCGTCGCCGAGGACCAGTCCGCCGTACGGGCCGGGCTGGTGCTCATCCTGCGCAGCGCACCCGACAT
CGAGGTGGTCGGGGAGGCGGCGGACGGGGAGCAGGCGGTGGCGCTCGCCCGGGAGCTGCGGCCGGACCTGGTGCTGATGG
ACGTGCAGATGCCCCGGCTGGACGGGGTCTCGGCGACCCGCCAAGTCGTCGCCGAGGATCTCGCGGACGTGCTCGTGCTC
ACCACCTTCGACCTCGACGAGTACGTCTTCGGTGCGCTGCGGGCCGGCGCCGCCGGGTTCCTGCTCAAGGACGCGGAGGC
GAAGGACCTCATCACGGCCGTGCGGACGGTGGGGCGCGGCGAGGGCCTGATCGCCCCGGCCGTCACCCGGCGTCTGATCG
CCGAGTTCGCCGGCGGGCCCGTGCGTGAGCCGACGGCCGATCCGTCCGTCCTCGGCTCACTCACCCGGCGCGAGCGGGAG
GTGCTGTCCTGCCTCGGGAAAGGGCTGGCGAACGCGGAGATCGCCCAGCGGCTGGACATGGCCGAGGCGACGGTGAAGAC
CCACGTCAGCCGCCTGCTGGGCAAGCTCGATCTGCGCAACCGGGTCCAGGCGGCCGTGCTGGCACAGGAGTGGGGAGTCT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.654

100

0.408
  degU Bacillus subtilis subsp. subtilis str. 168

38.009

100

0.394