Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   WBM82_RS08555 Genome accession   NZ_CP147494
Coordinates   1548993..1549442 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain YT1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1543993..1554442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS08515 (WBM82_08545) ctaE 1544009..1544632 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  WBM82_RS08520 (WBM82_08550) ctaF 1544635..1544967 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  WBM82_RS08525 (WBM82_08555) ctaG 1544995..1545888 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  WBM82_RS08530 (WBM82_08560) ylbA 1545920..1546282 (-) 363 WP_003232238.1 YugN family protein -
  WBM82_RS08535 (WBM82_08565) ylbB 1546422..1546868 (+) 447 WP_003221362.1 CBS domain-containing protein -
  WBM82_RS08540 (WBM82_08570) ylbC 1546952..1547992 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  WBM82_RS08545 (WBM82_08575) ylbD 1548224..1548622 (+) 399 WP_003232233.1 YlbD family protein -
  WBM82_RS08550 (WBM82_08580) ylbE 1548638..1548877 (+) 240 WP_003232231.1 YlbE-like family protein -
  WBM82_RS08555 (WBM82_08585) ylbF 1548993..1549442 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  WBM82_RS08560 (WBM82_08590) ylbG 1549497..1549769 (+) 273 WP_009967171.1 YlbG family protein -
  WBM82_RS08565 (WBM82_08595) rsmD 1550092..1550646 (+) 555 WP_160221559.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WBM82_RS08570 (WBM82_08600) coaD 1550651..1551136 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  WBM82_RS08575 (WBM82_08605) spoVV 1551147..1552373 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  WBM82_RS08580 (WBM82_08610) ylbK 1552554..1553336 (+) 783 WP_003232221.1 patatin family protein -
  WBM82_RS08585 (WBM82_08615) sepM 1553338..1554363 (+) 1026 WP_160221560.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=859511 WBM82_RS08555 WP_003221370.1 1548993..1549442(+) (ylbF) [Bacillus subtilis strain YT1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=859511 WBM82_RS08555 WP_003221370.1 1548993..1549442(+) (ylbF) [Bacillus subtilis strain YT1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1