Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   Q3V62_RS07475 Genome accession   NZ_CP130522
Coordinates   1572976..1574046 (-) Length   356 a.a.
NCBI ID   WP_000776407.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA23-SX     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1567976..1579046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V62_RS07435 gcvPA 1568153..1569499 (-) 1347 WP_103155515.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  Q3V62_RS07440 gcvT 1569519..1570610 (-) 1092 WP_234724617.1 glycine cleavage system aminomethyltransferase GcvT -
  Q3V62_RS07445 - 1570769..1571293 (-) 525 WP_001015116.1 shikimate kinase -
  Q3V62_RS07450 - 1571283..1571429 (-) 147 WP_001789879.1 hypothetical protein -
  Q3V62_RS07455 comGF 1571526..1572023 (-) 498 WP_001838632.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q3V62_RS07460 comGE 1571941..1572240 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  Q3V62_RS07465 comGD 1572227..1572673 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q3V62_RS07470 comGC 1572651..1572962 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  Q3V62_RS07475 comGB 1572976..1574046 (-) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q3V62_RS07480 comGA 1574018..1574992 (-) 975 WP_000697218.1 competence type IV pilus ATPase ComGA Machinery gene
  Q3V62_RS07485 - 1575044..1575667 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  Q3V62_RS07490 - 1575664..1575993 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  Q3V62_RS07495 - 1575993..1576979 (-) 987 WP_000161315.1 ROK family glucokinase -
  Q3V62_RS07500 - 1576976..1577179 (-) 204 WP_000087561.1 YqgQ family protein -
  Q3V62_RS07505 - 1577160..1578623 (-) 1464 WP_001017869.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41465.90 Da        Isoelectric Point: 10.1030

>NTDB_id=859366 Q3V62_RS07475 WP_000776407.1 1572976..1574046(-) (comGB) [Staphylococcus aureus strain SA23-SX]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMAYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIMVSILAIIMKLFYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=859366 Q3V62_RS07475 WP_000776407.1 1572976..1574046(-) (comGB) [Staphylococcus aureus strain SA23-SX]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGGCATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATGGTATCTATATT
GGCTATTATTATGAAATTATTTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGTTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

98.596

100

0.986
  comGB Staphylococcus aureus N315

98.596

100

0.986