Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   WBI56_RS06140 Genome accession   NZ_CP147492
Coordinates   1191591..1192508 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain MC4-2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1186591..1197508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS06125 (WBI56_06125) trpS 1187172..1188164 (-) 993 WP_015483084.1 tryptophan--tRNA ligase -
  WBI56_RS06130 (WBI56_06130) oppA 1188908..1190545 (+) 1638 WP_021479550.1 oligopeptide ABC transporter substrate-binding protein OppA -
  WBI56_RS06135 (WBI56_06135) oppB 1190652..1191587 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  WBI56_RS06140 (WBI56_06140) amiD 1191591..1192508 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  WBI56_RS06145 (WBI56_06145) oppD 1192513..1193589 (+) 1077 WP_338733212.1 oligopeptide ABC transporter ATP-binding protein OppD -
  WBI56_RS06150 (WBI56_06150) oppF 1193591..1194508 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  WBI56_RS06155 (WBI56_06155) yjbB 1194615..1195832 (+) 1218 WP_338734129.1 MFS transporter -
  WBI56_RS06160 (WBI56_06160) yjbC 1195995..1196573 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  WBI56_RS06165 (WBI56_06165) spx 1196754..1197149 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=859348 WBI56_RS06140 WP_003232954.1 1191591..1192508(+) (amiD) [Bacillus subtilis strain MC4-2]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=859348 WBI56_RS06140 WP_003232954.1 1191591..1192508(+) (amiD) [Bacillus subtilis strain MC4-2]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTTTTAAATGCGGATAAGCCCCCT
TCAAAAGATCACTGGTTCGGCACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGAGCGCGAATCTCAAT
CTTTATCGGTGTCGCAGCCGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGCATCGCTGACATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGGCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAACATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAAGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTGCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCCATTTTGGTCACGATGACATTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGATGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364