Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   K6J80_RS19170 Genome accession   NZ_AP024553
Coordinates   216927..217787 (-) Length   286 a.a.
NCBI ID   WP_001884047.1    Uniprot ID   Q9KNL3
Organism   Vibrio cholerae strain IDH-03329     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 211927..222787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J80_RS01030 gspL 212185..213396 (+) 1212 WP_001288747.1 type II secretion system protein GspL -
  K6J80_RS01035 - 213406..213903 (+) 498 WP_000661339.1 type II secretion system protein M -
  K6J80_RS01040 - 213905..214663 (+) 759 WP_000817146.1 type II secretion system protein N -
  K6J80_RS01045 cysQ 214715..215542 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  K6J80_RS01050 nudE 215565..216113 (-) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  K6J80_RS01055 nfuA 216252..216839 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  K6J80_RS19170 comF 216927..217787 (-) 861 WP_001884047.1 ComF family protein Machinery gene
  K6J80_RS01070 bioH 217723..218484 (+) 762 WP_001240449.1 pimeloyl-ACP methyl ester esterase BioH -
  K6J80_RS01075 - 218646..219116 (+) 471 WP_000961392.1 hypothetical protein -
  K6J80_RS01080 - 219209..221530 (-) 2322 WP_000030087.1 Tex family protein -
  K6J80_RS01085 greB 221775..222260 (+) 486 WP_000850496.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32545.47 Da        Isoelectric Point: 8.0588

>NTDB_id=85906 K6J80_RS19170 WP_001884047.1 216927..217787(-) (comF) [Vibrio cholerae strain IDH-03329]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANMLNVEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=85906 K6J80_RS19170 WP_001884047.1 216927..217787(-) (comF) [Vibrio cholerae strain IDH-03329]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGTCGACTGGCGCTAGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATATGCTGAACGTTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCGACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGCGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KNL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

100

100

1
  comF Vibrio campbellii strain DS40M4

47.059

83.217

0.392

Multiple sequence alignment