Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   Q2T90_RS01305 Genome accession   NZ_CP130489
Coordinates   263502..265934 (-) Length   810 a.a.
NCBI ID   WP_302885713.1    Uniprot ID   -
Organism   Staphylococcus devriesei strain GYZ2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 258502..270934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2T90_RS01285 (Q2T90_01285) - 259479..259787 (-) 309 WP_107506286.1 DUF1292 domain-containing protein -
  Q2T90_RS01290 (Q2T90_01290) ruvX 259803..260228 (-) 426 WP_103166594.1 Holliday junction resolvase RuvX -
  Q2T90_RS01295 (Q2T90_01295) - 260232..260492 (-) 261 WP_107506287.1 IreB family regulatory phosphoprotein -
  Q2T90_RS01300 (Q2T90_01300) alaS 260559..263189 (-) 2631 WP_302885712.1 alanine--tRNA ligase -
  Q2T90_RS01305 (Q2T90_01305) recD2 263502..265934 (-) 2433 WP_302885713.1 ATP-dependent RecD-like DNA helicase Machinery gene
  Q2T90_RS01310 (Q2T90_01310) - 265936..266607 (-) 672 WP_103166590.1 tetratricopeptide repeat protein -
  Q2T90_RS01315 (Q2T90_01315) mnmA 266821..267933 (-) 1113 WP_103166589.1 tRNA 2-thiouridine(34) synthase MnmA -
  Q2T90_RS01320 (Q2T90_01320) - 267936..269075 (-) 1140 WP_103166588.1 cysteine desulfurase family protein -
  Q2T90_RS01325 (Q2T90_01325) - 269332..270336 (+) 1005 WP_103166587.1 LLM class flavin-dependent oxidoreductase -
  Q2T90_RS01330 (Q2T90_01330) - 270419..270565 (-) 147 WP_167409746.1 SAS049 family protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 91627.77 Da        Isoelectric Point: 4.7123

>NTDB_id=858578 Q2T90_RS01305 WP_302885713.1 263502..265934(-) (recD2) [Staphylococcus devriesei strain GYZ2]
MSNPTLFDYSMIKGTVDTILFQNNDNFYTVLKVDTIETNESFDNLPTVVGFFPNIVEGDVYTFKGQLVEHPRYGKQLKAD
TFEKELPQTKDAIVSYLSSDLFKGIGKKTAQNIVNTIGENAINDILNDASVLANVPSLSKKKQKQIAEQVSANQESEKIM
IRLHDLGFGPKLSMAIYQFYQSETLHVLEKNPYQLVYDVKGIGFQKADNLARNSGVKFNDTERLKAGLLYTLEEECIKQG
HTYLTYNHIIEVTKEILSNEQGEEVIEAPQLERVIQLLSEENKLISDNDRVAIPSLNYSELKSVQNLYRIKTFKNKLKQI
EQSDLQIHIGSIEETNGVSYAPSQKEALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYSDYQDDEYPVVL
AAPTGRASKRLQESTGLEAMTIHRLIGWNQETQPDDILDNEIKAKLIIIDEMSMVDTWLFHQFLSAVPLDAQIILVGDED
QLPSVGPGQIFKDLIESQVLPRVNLTEVYRQQDGSSIIDLAHRMKHGETIDITQRYHDRSFINCSVDQIPTVVEKVVASA
VNKDYDMSDIQVLAPMYKGSAGIKRLNQVLQNILNPKEDDTREIEFGDIRFRKGDKVLQLVNRPNDNIFNGDIGIIVGIF
WAKENALNKDVVIVDFEGNEITFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKQSLVL
LGDPRAFDIGLNTQGQERHTQLREFILAYFKNESNQEQSSTDQRTNISNELANDEDAHNRDNIVLSETTIYRIDPMINMG
DVSPYDFVEC

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=858578 Q2T90_RS01305 WP_302885713.1 263502..265934(-) (recD2) [Staphylococcus devriesei strain GYZ2]
ATGTCAAACCCTACACTTTTTGATTATTCAATGATTAAAGGAACAGTAGATACGATATTATTTCAGAATAATGATAACTT
TTATACTGTTCTTAAAGTAGATACAATTGAAACAAATGAATCATTCGATAACTTGCCAACGGTGGTAGGGTTTTTTCCTA
ATATAGTAGAGGGCGACGTATATACGTTTAAAGGACAACTCGTGGAACACCCACGTTACGGTAAACAACTTAAAGCAGAT
ACGTTTGAAAAAGAATTACCACAAACTAAAGACGCCATTGTGAGCTATTTATCAAGTGACCTTTTCAAAGGAATAGGTAA
AAAAACGGCACAAAATATTGTTAATACAATCGGAGAAAATGCTATAAACGATATATTAAATGATGCTTCAGTATTAGCGA
ATGTGCCTAGTTTATCTAAGAAAAAGCAGAAACAAATAGCTGAACAAGTGAGCGCCAATCAAGAATCAGAAAAGATAATG
ATTAGATTGCATGATTTAGGATTTGGACCTAAACTTTCGATGGCAATTTATCAATTTTATCAATCTGAAACCTTACATGT
TTTAGAAAAAAATCCTTATCAGCTTGTATATGATGTTAAGGGAATTGGTTTTCAAAAAGCTGATAATTTAGCTCGTAATA
GCGGAGTGAAATTTAATGATACAGAGCGCTTAAAAGCTGGTCTATTATATACACTAGAAGAGGAATGTATCAAGCAAGGG
CATACATACTTAACTTATAATCACATCATTGAAGTTACTAAAGAGATATTAAGTAATGAACAAGGTGAAGAAGTAATTGA
AGCGCCCCAACTTGAAAGAGTAATACAATTATTATCAGAAGAGAATAAACTGATATCTGATAATGATCGTGTCGCTATAC
CTAGTCTCAATTATTCAGAATTAAAAAGCGTTCAGAACTTATATCGTATCAAAACATTTAAAAATAAACTCAAACAAATT
GAACAATCTGATTTGCAAATCCATATTGGAAGTATTGAAGAGACTAATGGTGTATCTTATGCGCCTTCTCAAAAAGAAGC
CTTACAAACTGCAATCAATTCTAAAATTATGCTATTAACTGGCGGTCCTGGTACAGGTAAAACAACTGTTATTAAAGGAA
TAGTGGAACTATATGCGGAAATACATGGCTTATCTTTAGATTATTCTGATTATCAAGATGATGAATATCCTGTGGTCTTG
GCTGCCCCAACAGGCCGTGCATCTAAACGATTACAAGAATCAACGGGTTTAGAGGCTATGACGATTCATCGTCTAATAGG
TTGGAATCAGGAAACACAACCCGATGATATTTTAGATAATGAAATTAAGGCTAAATTAATTATTATTGATGAGATGTCGA
TGGTGGATACATGGTTATTTCATCAATTCTTAAGTGCAGTACCTTTGGATGCTCAAATTATCCTTGTAGGAGATGAAGAT
CAACTGCCTTCTGTAGGACCAGGACAGATTTTTAAAGATTTGATTGAATCTCAAGTATTACCTAGGGTTAATTTAACTGA
AGTGTACCGTCAACAAGATGGCTCAAGTATTATCGACTTAGCGCATCGGATGAAGCATGGTGAAACTATAGATATCACTC
AACGTTATCATGATAGAAGCTTTATTAACTGTTCAGTAGATCAAATTCCCACCGTTGTTGAAAAGGTCGTCGCCAGTGCT
GTAAATAAAGATTACGATATGAGTGATATCCAAGTTTTAGCACCTATGTATAAAGGTAGTGCAGGTATTAAACGACTTAA
TCAAGTATTACAAAATATATTAAATCCCAAAGAAGATGATACTAGAGAAATTGAGTTTGGCGATATAAGATTTCGCAAGG
GCGATAAAGTACTACAATTAGTTAATAGACCTAATGACAATATATTTAATGGAGATATTGGTATTATAGTTGGTATCTTT
TGGGCAAAGGAAAACGCACTCAATAAGGATGTAGTTATCGTAGACTTTGAAGGCAATGAAATTACTTTTACACGTCAAGA
TTTATTGGAATTAACTCATGCCTATTGTACATCTATCCATAAGTCTCAAGGGTCAGAATTTCCTATAGTCATTATGCCTA
TTGTTAAACAATATTTCCGTATGCTTCAACGACCTATCCTTTATACAGGGCTTACACGAGCTAAACAATCATTAGTTTTA
TTAGGAGATCCAAGAGCATTTGACATAGGACTGAATACACAAGGTCAAGAACGTCATACACAATTACGTGAGTTCATACT
GGCATACTTTAAAAACGAGTCAAATCAAGAACAATCATCTACTGACCAAAGGACTAATATCTCTAATGAATTAGCAAACG
ACGAAGACGCTCATAACAGAGATAATATAGTTTTGAGTGAAACTACTATTTATCGAATCGATCCAATGATAAATATGGGA
GACGTGTCCCCATATGATTTCGTTGAATGTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(340-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-656)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.981

91.111

0.483