Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   Q3A90_RS05945 Genome accession   NZ_CP130477
Coordinates   1123618..1125975 (+) Length   785 a.a.
NCBI ID   WP_014458149.1    Uniprot ID   A0A8D3WV14
Organism   Priestia megaterium strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1118618..1130975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3A90_RS05925 (Q3A90_05925) - 1119975..1120391 (+) 417 WP_013059297.1 Rrf2 family transcriptional regulator -
  Q3A90_RS05930 (Q3A90_05930) - 1120415..1121557 (+) 1143 WP_042991874.1 cysteine desulfurase family protein -
  Q3A90_RS05935 (Q3A90_05935) mnmA 1121664..1122776 (+) 1113 WP_014458148.1 tRNA 2-thiouridine(34) synthase MnmA -
  Q3A90_RS05940 (Q3A90_05940) - 1122934..1123593 (+) 660 WP_221779404.1 lipopolysaccharide assembly protein LapB -
  Q3A90_RS05945 (Q3A90_05945) recD2 1123618..1125975 (+) 2358 WP_014458149.1 ATP-dependent RecD-like DNA helicase Machinery gene
  Q3A90_RS05950 (Q3A90_05950) - 1126117..1126308 (+) 192 WP_013059292.1 hypothetical protein -
  Q3A90_RS05955 (Q3A90_05955) - 1126334..1126468 (+) 135 WP_013059291.1 YrzQ family protein -
  Q3A90_RS05960 (Q3A90_05960) - 1126583..1127644 (+) 1062 WP_013059290.1 AI-2E family transporter -
  Q3A90_RS05965 (Q3A90_05965) alaS 1128033..1130666 (+) 2634 WP_221779403.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88805.18 Da        Isoelectric Point: 5.0229

>NTDB_id=858524 Q3A90_RS05945 WP_014458149.1 1123618..1125975(+) (recD2) [Priestia megaterium strain S1]
MNEEQVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQTIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=858524 Q3A90_RS05945 WP_014458149.1 1123618..1125975(+) (recD2) [Priestia megaterium strain S1]
ATGAACGAAGAACAAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCAATTGTAACGGTCTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTTGTTA
CAGGCTATTTTCCTAAGTTGAATGAAGATGAAGTATACACGTTTTACGGGGACTTCAAAGAGCATCCAAAGTTTGGCCTG
CAGTTTCATGTTGAACAGTTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTATCTAGCGATTTATT
TCACGGAATCGGTAAAAAAACCGCTGAAAATATTGTGGACGCCCTAGGAGAACGCGCTATCTTTCGTATTTTACAAAATG
AGTCTGTGCTAAAAGAGGTGCCGAGGCTTTCAGCCGACAAGGCAGAAGCTTTAGTCACTCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACGGACCTCGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAACCCTTATCAGCTCGTAGAAGATATTCAAGGGATTGGTTTTAGCCGGGCCGATG
AACTTGGAAAGAGACTTGGTATGGCAACCAATCATCCTGATCGTTTGCGTGCGGGTATTTTATACGTCATTGAGCAAGAA
TGCAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGGAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATTATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTTTATGCTGAAAAAGGACTGGTTAAAGCTATTCAAACAATTATGGCTCAAACGCAGTAC
GAAGAGCAGTTTCCAGAATCAGAATTTTTACTAGCTCTGGGTGAGCTAGAAGAGCGATTAGACGTGCAATATGCACCGTC
TCAGCGCAAGGGTATACAAACCGCTTTAATGTCTCCAATGCTTCTTTTAACAGGTGGACCAGGTACAGGGAAAACAACGG
TTATTAAAGGAATAGTCGAACTCTATGCAGAACTTCATGGATGTTCGTTAAATCCAGGGGACTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTCGCACCTACCGGACGAGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCGGCGGTTACGAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGATCATAATGAGGAGAATCCAATTGACGGAAAATTACTGATTG
TGGATGAAGTATCAATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAATCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTGAGTTCAGAAGTAGTTCCTAC
CGTCCGCCTGACGGATGTATACAGGCAAGCGGAAGGATCGTCAATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCGAGGCAGCAAGGAGATCGTTCCTTTATTCGTTGTCAAGGACAGCACATCACAAACGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTTTAGCTCCTATGTATAAAGGTCCTGC
AGGGATTGATAAACTGAATGAAGTTCTTCAGGAATTATTTAACCCGGCTTCTGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGACATGGGA
GAAATCGTCTCGGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAATGAAGT
AACTTACACAAAGCAAGACTTTAATCAAATAACCCATGCATATTGCTGTTCCATCCATAAATCACAGGGAAGTGAATTTC
CTATTGTTGTACTTCCGATTGTCAAAAGCTATTACCGAATGCTGCGACGCAATTTGCTTTATACCGCCGTTACGCGAAGT
AAACAATTTTTAATTTTATGCGGCGAAGACGAAGCGTTTCAGCTTGGAGTCAGCCGAAATGAAGACAGCGTCCGACAAAC
GAACCTACAGCCCTTGCTTCGAGAAAGCTTAGATAACGATATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTTATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-551)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.939

99.618

0.637