Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q3O39_RS11350 Genome accession   NZ_CP130475
Coordinates   2316473..2317252 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SRCM126726     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2311473..2322252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3O39_RS11320 (Q3O39_11320) fliH 2311517..2312272 (-) 756 WP_032874891.1 flagellar assembly protein FliH -
  Q3O39_RS11325 (Q3O39_11325) fliG 2312265..2313281 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  Q3O39_RS11330 (Q3O39_11330) fliF 2313294..2314904 (-) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  Q3O39_RS11335 (Q3O39_11335) fliE 2314947..2315267 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  Q3O39_RS11340 (Q3O39_11340) flgC 2315278..2315730 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  Q3O39_RS11345 (Q3O39_11345) flgB 2315730..2316119 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  Q3O39_RS11350 (Q3O39_11350) codY 2316473..2317252 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q3O39_RS11355 (Q3O39_11355) hslU 2317290..2318693 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  Q3O39_RS11360 (Q3O39_11360) hslV 2318710..2319255 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  Q3O39_RS11365 (Q3O39_11365) xerC 2319271..2320188 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  Q3O39_RS11370 (Q3O39_11370) trmFO 2320258..2321565 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=858467 Q3O39_RS11350 WP_003154263.1 2316473..2317252(-) (codY) [Bacillus velezensis strain SRCM126726]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=858467 Q3O39_RS11350 WP_003154263.1 2316473..2317252(-) (codY) [Bacillus velezensis strain SRCM126726]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471