Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q3B96_RS17845 Genome accession   NZ_CP130465
Coordinates   3445518..3446297 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis strain MGMM9     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3440518..3451297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3B96_RS17825 (Q3B96_17825) trmFO 3441215..3442519 (+) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  Q3B96_RS17830 (Q3B96_17830) xerC 3442586..3443500 (+) 915 WP_003181750.1 tyrosine recombinase XerC -
  Q3B96_RS17835 (Q3B96_17835) hslV 3443514..3444059 (+) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  Q3B96_RS17840 (Q3B96_17840) hslU 3444076..3445479 (+) 1404 WP_003181754.1 HslU--HslV peptidase ATPase subunit -
  Q3B96_RS17845 (Q3B96_17845) codY 3445518..3446297 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q3B96_RS17850 (Q3B96_17850) flgB 3446651..3447040 (+) 390 WP_003181758.1 flagellar basal body rod protein FlgB -
  Q3B96_RS17855 (Q3B96_17855) flgC 3447040..3447492 (+) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  Q3B96_RS17860 (Q3B96_17860) fliE 3447506..3447823 (+) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  Q3B96_RS17865 (Q3B96_17865) fliF 3447874..3449475 (+) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  Q3B96_RS17870 (Q3B96_17870) fliG 3449489..3450505 (+) 1017 WP_003181768.1 flagellar motor switch protein FliG -
  Q3B96_RS17875 (Q3B96_17875) fliH 3450489..3451256 (+) 768 WP_016885763.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=858383 Q3B96_RS17845 WP_003181756.1 3445518..3446297(+) (codY) [Bacillus licheniformis strain MGMM9]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=858383 Q3B96_RS17845 WP_003181756.1 3445518..3446297(+) (codY) [Bacillus licheniformis strain MGMM9]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467