Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q3O83_RS08145 Genome accession   NZ_CP130445
Coordinates   1610718..1611497 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain C6.7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1605718..1616497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3O83_RS08125 (Q3O83_08125) trmFO 1606405..1607712 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  Q3O83_RS08130 (Q3O83_08130) xerC 1607782..1608699 (+) 918 WP_043867088.1 tyrosine recombinase XerC -
  Q3O83_RS08135 (Q3O83_08135) hslV 1608715..1609260 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  Q3O83_RS08140 (Q3O83_08140) hslU 1609268..1610680 (+) 1413 WP_254900101.1 HslU--HslV peptidase ATPase subunit -
  Q3O83_RS08145 (Q3O83_08145) codY 1610718..1611497 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q3O83_RS08150 (Q3O83_08150) flgB 1611851..1612240 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  Q3O83_RS08155 (Q3O83_08155) flgC 1612240..1612692 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  Q3O83_RS08160 (Q3O83_08160) fliE 1612703..1613023 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  Q3O83_RS08165 (Q3O83_08165) fliF 1613066..1614676 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  Q3O83_RS08170 (Q3O83_08170) fliG 1614689..1615705 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  Q3O83_RS08175 (Q3O83_08175) fliH 1615698..1616453 (+) 756 WP_060386938.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=858205 Q3O83_RS08145 WP_003154263.1 1610718..1611497(+) (codY) [Bacillus amyloliquefaciens strain C6.7]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=858205 Q3O83_RS08145 WP_003154263.1 1610718..1611497(+) (codY) [Bacillus amyloliquefaciens strain C6.7]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471