Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QYC30_RS04975 Genome accession   NZ_CP130347
Coordinates   1042811..1043890 (+) Length   359 a.a.
NCBI ID   WP_315862964.1    Uniprot ID   -
Organism   Thermosynechococcus sp. JY1339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1037811..1048890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC30_RS04955 (QYC30_04955) comA 1038286..1039983 (-) 1698 WP_302677575.1 phospholipase D-like domain-containing protein Machinery gene
  QYC30_RS04960 (QYC30_04960) - 1040106..1041335 (+) 1230 WP_149819384.1 acetate/propionate family kinase -
  QYC30_RS04965 (QYC30_04965) - 1041505..1041936 (+) 432 WP_286649438.1 hypothetical protein -
  QYC30_RS04970 (QYC30_04970) - 1041966..1042547 (+) 582 WP_302677576.1 L,D-transpeptidase -
  QYC30_RS04975 (QYC30_04975) pilM 1042811..1043890 (+) 1080 WP_315862964.1 type IV pilus assembly protein PilM Machinery gene
  QYC30_RS04980 (QYC30_04980) - 1043902..1044603 (+) 702 WP_302677577.1 PilN domain-containing protein -
  QYC30_RS04985 (QYC30_04985) - 1044600..1045319 (+) 720 WP_302677578.1 pilus assembly protein PilO -
  QYC30_RS04990 (QYC30_04990) - 1045414..1047576 (+) 2163 WP_302677579.1 AMIN domain-containing protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39221.21 Da        Isoelectric Point: 4.2866

>NTDB_id=858099 QYC30_RS04975 WP_315862964.1 1042811..1043890(+) (pilM) [Thermosynechococcus sp. JY1339]
MLGNLFAKPKQGLGIELTAERVNIVQLQRQKQGLKMTAMASVPLSEGAIEEGRIIDTTAVADAIRQGIEDKRIKQKEVIS
AIPMNEAVIRLIRLPAELPDYELREVVLMQEAPLYLPFPREEADVDYQKLGTSLDEDGIERVEILLVGTPREVTDAYINA
FTQAGLQLTALEVTNFALMRTLRDSLQQFVGEAAAIIDIGDEGTEISIVKDGIPQFNRKVPIGKERMQEAISRAMNLPPS
MGVDLIENLTVPLEPMDVTGALNPSGAAILRVLSDLADEIRRSIDFYLNQGESLEVSQLLLAGPGASIGQVDEFFSQRLN
YATTLVDPISLLGLQTLEEIPLEKRPALGTVIGLGLRGA

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=858099 QYC30_RS04975 WP_315862964.1 1042811..1043890(+) (pilM) [Thermosynechococcus sp. JY1339]
GTGCTGGGAAATCTATTTGCAAAACCAAAGCAGGGCTTGGGGATTGAACTCACCGCAGAGCGGGTCAATATCGTACAGCT
TCAGCGGCAAAAGCAGGGTCTGAAAATGACCGCTATGGCCTCAGTGCCCTTGAGTGAAGGCGCCATTGAAGAAGGCCGCA
TCATTGACACCACCGCCGTCGCCGATGCCATCCGTCAAGGGATTGAGGATAAGCGCATCAAACAAAAAGAGGTGATCAGT
GCTATTCCCATGAATGAAGCCGTGATTCGCCTGATTCGCCTGCCTGCGGAATTACCCGACTACGAATTGCGGGAAGTGGT
TCTCATGCAGGAAGCCCCACTGTACCTTCCCTTTCCCCGTGAAGAGGCCGATGTTGACTATCAAAAACTGGGAACCTCCC
TTGATGAAGATGGCATTGAGCGGGTAGAAATTTTGCTCGTGGGCACGCCCCGCGAAGTGACCGATGCCTACATCAATGCC
TTTACCCAAGCCGGTTTACAACTCACCGCCCTTGAAGTGACCAATTTTGCCCTCATGCGTACCCTGCGGGATTCACTACA
GCAGTTTGTGGGCGAAGCAGCAGCGATTATTGATATAGGCGACGAGGGCACAGAAATTAGCATCGTCAAAGATGGCATTC
CCCAGTTCAACCGCAAAGTGCCCATTGGCAAAGAACGGATGCAAGAAGCCATTAGCCGCGCCATGAACTTGCCGCCTTCG
ATGGGCGTTGACCTGATTGAGAATCTGACCGTTCCCCTAGAGCCGATGGATGTGACCGGAGCACTCAACCCCAGTGGTGC
CGCTATTTTGCGAGTGCTCTCCGATCTAGCAGACGAAATCCGCCGCTCTATTGACTTTTACCTCAACCAAGGGGAAAGTC
TAGAGGTCTCGCAGTTGCTGCTTGCCGGTCCCGGTGCCAGTATTGGTCAAGTGGATGAGTTTTTTAGTCAGCGGCTCAAC
TATGCCACCACTTTGGTTGACCCCATTAGTTTGCTGGGACTGCAAACCCTAGAAGAGATTCCCCTCGAAAAACGCCCTGC
CCTCGGCACGGTGATTGGTCTTGGTCTGCGTGGCGCTTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

49.861

100

0.501