Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QYC27_RS11115 Genome accession   NZ_CP130344
Coordinates   2259631..2260710 (-) Length   359 a.a.
NCBI ID   WP_225901572.1    Uniprot ID   -
Organism   Thermosynechococcus sp. PP45     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2254631..2265710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC27_RS11100 (QYC27_11100) - 2255945..2258104 (-) 2160 WP_302678298.1 AMIN domain-containing protein -
  QYC27_RS11105 (QYC27_11105) - 2258199..2258921 (-) 723 WP_302678299.1 type 4a pilus biogenesis protein PilO -
  QYC27_RS11110 (QYC27_11110) - 2258918..2259619 (-) 702 WP_302678300.1 PilN domain-containing protein -
  QYC27_RS11115 (QYC27_11115) pilM 2259631..2260710 (-) 1080 WP_225901572.1 type IV pilus biogenesis protein PilM Machinery gene
  QYC27_RS11120 (QYC27_11120) - 2260974..2261555 (-) 582 WP_206200178.1 L,D-transpeptidase -
  QYC27_RS11125 (QYC27_11125) - 2261585..2262016 (-) 432 WP_302678301.1 hypothetical protein -
  QYC27_RS11130 (QYC27_11130) - 2262186..2263415 (-) 1230 WP_302678302.1 acetate/propionate family kinase -
  QYC27_RS11135 (QYC27_11135) comA 2263538..2265235 (+) 1698 WP_302678303.1 phospholipase D-like domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39231.20 Da        Isoelectric Point: 4.2866

>NTDB_id=858073 QYC27_RS11115 WP_225901572.1 2259631..2260710(-) (pilM) [Thermosynechococcus sp. PP45]
MLGNLFAKPKQGLGIELTPERVNIVQLQRQKQGLKMTAMASVPLSEGAIEEGRIIDTTAVADAIRQGIEDKRIKQKEVIS
AIPMNEAVIRLIRLPAELPDYELREVVLMQEAPLYLPFPREEADVDYQKLGTSLDEDGIERVEILLVGTPREVTDAYINA
FTQAGLQLTALEVTNFALMRTLRDSLQQFVGEAAAIIDIGDEGTEISIVKDGIPQFNRKVPIGKERMQEAISRAMNLPPS
MGVDLIENLTVPLEPMDVTGALNPSGAAILRVLSDLADEIRRSIDFYLNQGESLEVSQLLLAGPGASIGQVDEFFSQRLN
YATTLVDPISLLGLQTPEEIPLEKRPALGTVIGLGLRGA

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=858073 QYC27_RS11115 WP_225901572.1 2259631..2260710(-) (pilM) [Thermosynechococcus sp. PP45]
GTGCTGGGAAATCTATTTGCAAAACCAAAGCAGGGCTTGGGGATTGAACTCACCCCAGAGCGGGTCAATATCGTACAGCT
TCAGCGGCAAAAGCAGGGTCTGAAAATGACCGCTATGGCCTCAGTGCCCTTGAGTGAAGGCGCCATTGAAGAAGGCCGCA
TCATTGACACCACCGCCGTCGCCGATGCCATCCGTCAAGGGATTGAGGATAAGCGCATCAAACAAAAAGAGGTGATCAGT
GCCATTCCCATGAATGAAGCCGTGATTCGCCTGATTCGCCTGCCTGCGGAATTACCCGACTATGAATTGCGGGAAGTGGT
TCTCATGCAGGAAGCGCCCCTCTACCTGCCCTTTCCCCGTGAAGAGGCCGATGTTGACTATCAAAAACTGGGAACCTCCC
TTGATGAAGATGGCATTGAGCGGGTAGAAATTTTGCTCGTGGGCACGCCCCGCGAAGTGACCGATGCCTATATCAATGCC
TTTACCCAAGCCGGTTTACAACTCACCGCCCTTGAAGTGACCAATTTTGCCCTCATGCGTACCCTGCGGGATTCACTACA
GCAGTTTGTGGGCGAAGCAGCAGCGATTATTGATATAGGCGACGAGGGCACAGAAATTAGCATCGTCAAAGATGGCATTC
CCCAGTTCAACCGCAAAGTGCCCATTGGCAAAGAACGGATGCAAGAAGCCATTAGCCGCGCCATGAACTTGCCGCCTTCG
ATGGGCGTTGACCTGATTGAGAATCTGACCGTTCCCCTAGAGCCGATGGATGTGACCGGAGCACTCAACCCCAGTGGTGC
CGCTATTTTGCGAGTGCTCTCCGATCTAGCAGACGAAATCCGCCGCTCCATTGACTTTTACCTCAACCAAGGGGAAAGTC
TAGAGGTCTCGCAGTTGCTGCTTGCCGGTCCCGGTGCCAGTATTGGTCAAGTGGATGAGTTTTTTAGTCAGCGGCTCAAC
TATGCCACCACTTTGGTTGACCCCATTAGTTTGCTGGGACTGCAAACCCCGGAAGAGATTCCCCTCGAAAAACGCCCTGC
CCTCGGCACGGTGATTGGTCTTGGTCTGCGTGGCGCTTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

50.139

100

0.504