Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QYY55_RS15490 Genome accession   NZ_CP130331
Coordinates   3126740..3129172 (-) Length   810 a.a.
NCBI ID   WP_258268872.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain MGMM7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3121740..3134172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYY55_RS15480 (QYY55_15440) corA 3123753..3124718 (-) 966 WP_069482092.1 magnesium/cobalt transporter CorA -
  QYY55_RS15485 (QYY55_15445) hpaB 3125184..3126617 (-) 1434 WP_258268873.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  QYY55_RS15490 (QYY55_15450) recD2 3126740..3129172 (-) 2433 WP_258268872.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QYY55_RS15495 (QYY55_15455) hisA 3129362..3130129 (+) 768 WP_258268871.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  QYY55_RS15500 (QYY55_15460) - 3130126..3130413 (+) 288 WP_375134640.1 hypothetical protein -
  QYY55_RS15505 (QYY55_15465) - 3130683..3131414 (+) 732 WP_258268870.1 GTP pyrophosphokinase family protein -
  QYY55_RS15510 (QYY55_15470) - 3131500..3132942 (-) 1443 WP_375134641.1 DHA2 family efflux MFS transporter permease subunit -
  QYY55_RS15515 (QYY55_15475) - 3133133..3133792 (-) 660 WP_375134642.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90818.34 Da        Isoelectric Point: 5.0776

>NTDB_id=857933 QYY55_RS15490 WP_258268872.1 3126740..3129172(-) (recD2) [Lysinibacillus fusiformis strain MGMM7]
MSDHLDLFELNKFFILGRPIVSIFHNTQNMYSIIRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGANALRLILEDPSALDAVPRLSSEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAILHILNTAA
LSDGHVYLDAEHVLPLVKEMLEQSQRQEIPFEDISKACIELREDGKICGEETRLYLPSLYFSEVGIASKILTLVERNSKA
EHFSKDEIRKAIGETEELLHVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPKDLTSKTTDRSFIKSSVDQVGNVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETVEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVKGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMDVDEVIVEVEAVPVKQEVVQETAINDHKLTVETAPYIHPMIGMN
DVSPYDFLEK

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=857933 QYY55_RS15490 WP_258268872.1 3126740..3129172(-) (recD2) [Lysinibacillus fusiformis strain MGMM7]
ATGTCAGATCATCTCGATTTATTTGAACTCAATAAATTTTTTATTCTCGGACGTCCGATCGTCTCTATTTTTCATAACAC
ACAAAATATGTATTCCATTATACGAGTGAAAATTCAAGAGACAAACTTACAATATGAAGATAAAGAAATTATTGTTGTTG
GCTATTTTCCACCGTTACAAATGGATGAGCAATACCGCTTTACAGGTATATTAAAACAGCATCCTAAATATGGTGCACAA
TTCCAAATCGAGACATTTACAAAAGAGGTACCCGCTACTGAACAAGGAATTATTCATTATTTATCCAGTGACTTATTTGT
GGGAATCGGGAAAAAAACAGCTGAAACCATTGTTGAAAAACTAGGTGCTAATGCATTACGTCTTATTTTAGAAGATCCGA
GTGCACTGGATGCTGTTCCACGTTTATCATCTGAAAAAAAAGAAGTGATTCATCGTACGATTGAGCAAAACCTTGGTTTA
GAACGGGTAATGATCCAGCTGAATGAATGGGGTTTTGGTCCACAGCTTGGAATGAAAATATATCAAACCTATCGAACAGA
AGCCATTGAATTACTAACAGAAAACCCATATCGCTTGATAGAAGATGTGGAAGGGGTAGGGTTCTTTCGAGCAGATGAGC
TTGGTGCAAAATTAGGGATTACCGGAAAACATCCTGACCGTGTTAAAGCAGCGATTTTACATATTTTAAATACGGCTGCA
TTATCTGACGGGCATGTTTATCTAGACGCGGAGCATGTTCTACCACTTGTGAAGGAAATGCTTGAACAAAGTCAACGTCA
GGAAATTCCGTTTGAAGACATCTCAAAAGCGTGTATCGAGTTACGAGAAGATGGAAAAATTTGCGGGGAAGAAACAAGAT
TATATTTACCTTCTCTTTATTTTTCTGAGGTAGGAATTGCCTCCAAAATATTGACGCTTGTTGAACGGAATAGTAAGGCT
GAACATTTTAGCAAAGATGAGATTCGTAAAGCGATTGGCGAAACTGAGGAACTACTCCATGTGACTTATGCTGAAACACA
AGCAAATGCCATTGAACAGGCTTTAAATTCAGCCGTAATGATTTTAACAGGTGGACCTGGTACGGGTAAAACGACTGTTG
TACGTGGGGTTGTTGAAGTTTATGCGAAGCTTCATGGCTTATCATTAAATCCAAAAGAATATGCTCAAAAAGAGGAGCCT
TTTCCCATTATCCTTTGTGCACCCACTGGGCGAGCTGCTAAGCGCTTAGCTGAATCGACTGAACTACCAGCTATGACTAT
TCATCGTTTACTCGGCTTTACAGGTCAAGAAAAAGAAGAAGAGACTGAACGAGAGGTAACAGGTAAGCTTATTATTGTAG
ATGAAATGTCAATGGTGGATACTTGGCTTGCTCATCAATTATTAAAAGCTTTACATGAGGATGTACAGGTTGTCTTTGTA
GGGGACCAAGACCAATTACCGCCTGTAGGACCTGGACAGGTATTAAAGGATTTATTAGCATCCAAGCAACTCCCAACGGT
GGAATTGACAGATGTTTATCGACAAGCAGAGGGCTCTACAATTATTGAACTAGCCCATCAAATCAAAAAAGGAACCATTC
CGAAAGATTTAACATCGAAAACTACTGATCGCTCGTTTATTAAATCTTCCGTCGATCAGGTTGGAAATGTTGTGACACAG
GTAGTAAAAAGTGCTGTCGCTAAGGGGCAGGAAATTCGTAATATTCAAGTGTTAGCTCCGATGTATAAAGGTCCTGCTGG
CATTGATAATTTAAATAAAATGATTCAAGAGCTTATTAATCCTAATGATACGGGGACAAGAAAGGAACTTGTCTTTGGGG
ACGTAACGTATCGAATAAAGGATAAAGTCCTGCAGCTAGTCAATCAACCTGAAAGTAATGTTTTTAATGGTGATATGGGA
GAAGTCATTAGTATTATTAAGGCAAAAGAGACAGTAGAAAAACAAGATTTACTGATCGTATCTTTTGATGGCATTGAAGT
GACCTATCAACGAAGTGACCTCAATCAATTGACACTAGCTTATTGTTGCTCCATTCATAAATCTCAAGGTTCAGAGTTTC
AAACTGTCATTATGCCTGTTGTCAAAGGGTATTCAAAAATGCTGCGTCGTAATCTTTTATACACAGGGATTACAAGAGCG
AAAAACTTTTTGATTTTATGTGGGGAACCGGATGTCCTGGCAGATGGCTTGCAGCGGACAGATGATTTACAGCGTTTTAC
TTCGTTGCGTGCTCGTTTAAATCCAATGGATGTCGACGAAGTGATTGTTGAAGTAGAGGCAGTTCCAGTAAAACAAGAGG
TTGTGCAAGAAACAGCTATCAATGACCATAAATTAACAGTAGAAACAGCCCCTTATATTCATCCCATGATTGGTATGAAT
GATGTCTCCCCTTATGATTTTTTGGAAAAGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

AAA domain (AAA_30)

(343-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.211

100

0.525