Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   Q3F87_RS06935 Genome accession   NZ_CP130328
Coordinates   1234671..1235297 (+) Length   208 a.a.
NCBI ID   WP_166139440.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain TB2-2B     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1229671..1240297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F87_RS06900 (Q3F87_06900) kdsB 1229971..1230732 (+) 762 WP_104425952.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Q3F87_RS06905 (Q3F87_06905) - 1230747..1231727 (+) 981 WP_302700480.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  Q3F87_RS06910 (Q3F87_06910) - 1231745..1232086 (+) 342 WP_004784000.1 PilZ domain-containing protein -
  Q3F87_RS06915 (Q3F87_06915) - 1232114..1232887 (+) 774 WP_125279028.1 TatD family hydrolase -
  Q3F87_RS06920 (Q3F87_06920) - 1232928..1233542 (+) 615 WP_125279027.1 TetR/AcrR family transcriptional regulator -
  Q3F87_RS06925 (Q3F87_06925) - 1233552..1234100 (+) 549 WP_125279026.1 type II secretion system protein -
  Q3F87_RS06930 (Q3F87_06930) gspI 1234090..1234674 (+) 585 WP_171521873.1 type II secretion system minor pseudopilin GspI -
  Q3F87_RS06935 (Q3F87_06935) xcpW 1234671..1235297 (+) 627 WP_166139440.1 type II secretion system minor pseudopilin GspJ Machinery gene
  Q3F87_RS06940 (Q3F87_06940) gspK 1235312..1236283 (+) 972 WP_166139442.1 type II secretion system minor pseudopilin GspK -
  Q3F87_RS06945 (Q3F87_06945) - 1236444..1237040 (+) 597 WP_180011506.1 6-carboxytetrahydropterin synthase -
  Q3F87_RS06950 (Q3F87_06950) ung 1237086..1237799 (+) 714 WP_004783992.1 uracil-DNA glycosylase -
  Q3F87_RS06955 (Q3F87_06955) - 1237796..1238917 (+) 1122 WP_180011508.1 enoyl-CoA hydratase/isomerase family protein -
  Q3F87_RS06960 (Q3F87_06960) tadA 1238924..1239439 (+) 516 WP_104425959.1 tRNA adenosine(34) deaminase TadA -
  Q3F87_RS06965 (Q3F87_06965) - 1239502..1239936 (+) 435 WP_180014273.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23954.25 Da        Isoelectric Point: 4.7617

>NTDB_id=857888 Q3F87_RS06935 WP_166139440.1 1234671..1235297(+) (xcpW) [Acinetobacter variabilis strain TB2-2B]
MKSKGFTLVELLVAIAIFAVLSALGWKVFDYIVQTKDRNAVHEQRLSQLQDTYQQILRDTVQAVPLTANINGDIQPALVL
QNGRFNFSKTGVTDPLEEGISPDERVEYQYRADEQKLYRLKYRNLNQTGRDQPESSVLLSEVEQFQIVVLNPNEMTQWPD
SSFDLNQIEQKQRLPKGIKINLMVNGVSYEWIFSLLNTDFLLETQKLT

Nucleotide


Download         Length: 627 bp        

>NTDB_id=857888 Q3F87_RS06935 WP_166139440.1 1234671..1235297(+) (xcpW) [Acinetobacter variabilis strain TB2-2B]
ATGAAGTCTAAGGGATTTACGCTGGTCGAACTACTGGTTGCTATTGCTATTTTCGCCGTACTCTCTGCTCTAGGCTGGAA
AGTATTTGATTATATTGTACAAACCAAAGACCGTAATGCAGTGCATGAACAGCGCTTAAGTCAGTTGCAAGATACTTATC
AGCAGATCTTGCGTGATACGGTGCAGGCGGTGCCTTTAACGGCCAATATTAATGGTGATATTCAGCCGGCACTGGTTTTG
CAAAACGGACGTTTTAACTTTAGTAAGACTGGAGTCACCGATCCTCTGGAAGAGGGGATTTCTCCAGATGAACGGGTTGA
ATATCAGTACCGGGCAGATGAACAAAAACTCTATCGCCTGAAATACCGGAATTTAAACCAGACCGGGCGTGATCAACCTG
AATCCAGTGTGTTGTTGTCCGAGGTTGAGCAGTTTCAGATCGTAGTACTTAATCCAAATGAAATGACCCAATGGCCAGAC
TCATCTTTTGATTTAAATCAGATTGAGCAAAAACAGCGTTTACCCAAAGGCATTAAAATTAACTTAATGGTTAATGGGGT
CAGTTATGAGTGGATTTTCAGTTTATTGAATACAGATTTCCTGCTTGAAACCCAAAAGTTAACCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type II secretion system (T2SS), protein J (T2SSJ)

(58-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

60.199

96.635

0.582