Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q2B68_RS09245 Genome accession   NZ_CP130280
Coordinates   1807756..1808535 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain PM415     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1802756..1813535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS09225 (Q2B68_09225) trmFO 1803443..1804750 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  Q2B68_RS09230 (Q2B68_09230) xerC 1804820..1805737 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  Q2B68_RS09235 (Q2B68_09235) hslV 1805753..1806298 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  Q2B68_RS09240 (Q2B68_09240) hslU 1806306..1807718 (+) 1413 WP_254900101.1 HslU--HslV peptidase ATPase subunit -
  Q2B68_RS09245 (Q2B68_09245) codY 1807756..1808535 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q2B68_RS09250 (Q2B68_09250) flgB 1808889..1809278 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  Q2B68_RS09255 (Q2B68_09255) flgC 1809278..1809730 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  Q2B68_RS09260 (Q2B68_09260) fliE 1809741..1810061 (+) 321 WP_003154258.1 flagellar hook-basal body complex protein FliE -
  Q2B68_RS09265 (Q2B68_09265) fliF 1810104..1811714 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  Q2B68_RS09270 (Q2B68_09270) fliG 1811727..1812743 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  Q2B68_RS09275 (Q2B68_09275) fliH 1812736..1813491 (+) 756 WP_302565210.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=857547 Q2B68_RS09245 WP_003154263.1 1807756..1808535(+) (codY) [Bacillus amyloliquefaciens strain PM415]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=857547 Q2B68_RS09245 WP_003154263.1 1807756..1808535(+) (codY) [Bacillus amyloliquefaciens strain PM415]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471