Detailed information NTG0857150

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: RdKW20_RS06115
• Genome accession: NZ_CP146693
• Coordinates: 1228147..1229487 (+)
• Length: 446 a.a.
• NCBI ID: WP_005693606.1
• Uniprot ID: -
• Organism: Haemophilus influenzae strain Rd-KW20
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1223147..1234487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RdKW20_RS06100 (RdKW20_001142)	lrp	1224202..1224681 (+)	480	WP_005664572.1	leucine-responsive transcriptional regulator Lrp	-
RdKW20_RS06105 (RdKW20_001143)	-	1224683..1227451 (+)	2769	WP_005693610.1	DNA translocase FtsK	-
RdKW20_RS06110 (RdKW20_001144)	lolA	1227469..1228086 (+)	618	WP_005693608.1	outer membrane lipoprotein chaperone LolA	-
RdKW20_RS06115 (RdKW20_001145)	rarA	1228147..1229487 (+)	1341	WP_005693606.1	replication-associated recombination protein A	Machinery gene
RdKW20_RS06120 (RdKW20_001146)	aroA	1229569..1230867 (-)	1299	WP_005693605.1	3-phosphoshikimate 1-carboxyvinyltransferase	-
RdKW20_RS06125 (RdKW20_001147)	purU	1230867..1231703 (-)	837	WP_005693604.1	formyltetrahydrofolate deformylase	-
RdKW20_RS06130 (RdKW20_001148)	-	1231773..1232177 (-)	405	WP_005647241.1	H-NS family nucleoid-associated regulatory protein	-
RdKW20_RS06135 (RdKW20_001149)	-	1232620..1234140 (+)	1521	WP_032828365.1	Na+/H+ antiporter NhaC family protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50282.13 Da
• Isoelectric Point: 6.6259

>NTDB_id=857150 RdKW20_RS06115 WP_005693606.1 1228147..1229487(+) (rarA) [Haemophilus influenzae strain Rd-KW20]
MSNFNFDFAENDFRPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIYSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAVEDPKRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
SRVGAYEGERAIAQAIIYLSVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK

Nucleotide

• Length: 1341 bp

>NTDB_id=857150 RdKW20_RS06115 WP_005693606.1 1228147..1229487(+) (rarA) [Haemophilus influenzae strain Rd-KW20]
ATGTCTAACTTCAATTTTGATTTTGCCGAAAATGATTTTCGCCCACTGGCAGCCAAGATGCGTCCAACGAGTCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCACTGCGAAAAGCTATCCAAGCTGGTCATATTTATTCTATGA
TTTTGTGGGGCCCACCAGGTACGGGGAAAACAACCCTTGCAGAAATCATAGCACAACGTATTAATGCAGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGTATCAAAGAAATTCGTGAAGCCATTGATCGTGCAAAACAAAATCGTCTTGCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCGCACATTGAAGACGGAA
CCGTTATTTTTATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCGTTGCTTTCTCGTGCCCGAGTGTAT
GTGCTGAAATCACTCACAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTGTAGAAGATCCTAAACGTGGATTGGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTGCAAGTACTTGCCGAATATGTTAATGGGGATGCACGATTAGCTTTGAATT
GCCTCGAATTAATGGTGGATATGGCGGATGAAACGGAAAATGGAAAGAAAATTGACCGCACTTTATTAAAAGAAGTCTTA
GGCGAACGCCAAGCGAGATTTGATAAACAAGGTGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTTCGAGG
TTCTGCTCCAGATGCTGCGCTGTATTGGTATGCAAGAATTTTAACGGCAGGTGGAGACCCTTTATATGTCGCGCGCCGAT
TACTTGCCATTGCTTCAGAAGATGTGGGAAATGCAGATCCTCGTGCTATGCAAGTTGCATTGGCTGCTTGGGATTGCTTT
AGTCGCGTGGGGGCTTATGAAGGGGAGCGAGCCATCGCCCAAGCCATTATATATCTTTCGGTAGCACCAAAAAGTAATGC
GGTTTATACTGCATTTAACACTGCGAAACAGCAAGCGAAAGATTTGCCAGATTACGATGTTCCACCACATTTACGCAATG
CGCCGACTAATTTAATGAAAGAGCTCGGATATGGCACTGAATATCGTTATGCTCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACCTGAATTAAAAGATACTCAATATTATTTTCCGACAAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGGTTACGTGAGCAAGATAAAAGTGCGGTGAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (267-433)

• AAA C-terminal domain (AAA_assoc_2) (188-266)

• ATPase family associated with various cellular activities (AAA) (AAA) (53-159)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.243	94.843	0.372