Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   V9Z43_RS02190 Genome accession   NZ_CP146687
Coordinates   470915..471382 (-) Length   155 a.a.
NCBI ID   WP_000338336.1    Uniprot ID   -
Organism   Escherichia coli strain MS 198-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 465915..476382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z43_RS02165 (V9Z43_02165) rpsG 466056..466526 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  V9Z43_RS02170 (V9Z43_02170) fusA 466623..468737 (+) 2115 WP_000124703.1 elongation factor G -
  V9Z43_RS02175 (V9Z43_02175) tuf 468808..469992 (+) 1185 WP_000031783.1 elongation factor Tu -
  V9Z43_RS02180 (V9Z43_02180) bfd 470175..470369 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  V9Z43_RS02185 (V9Z43_02185) bfr 470442..470918 (+) 477 WP_000675515.1 bacterioferritin -
  V9Z43_RS02190 (V9Z43_02190) pilD 470915..471382 (-) 468 WP_000338336.1 A24 family peptidase Machinery gene
  V9Z43_RS02195 (V9Z43_02195) rpsJ 471761..472072 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  V9Z43_RS02200 (V9Z43_02200) rplC 472105..472734 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  V9Z43_RS02205 (V9Z43_02205) rplD 472745..473350 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  V9Z43_RS02210 (V9Z43_02210) rplW 473347..473649 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  V9Z43_RS02215 (V9Z43_02215) rplB 473667..474488 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  V9Z43_RS02220 (V9Z43_02220) rpsS 474505..474783 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  V9Z43_RS02225 (V9Z43_02225) rplV 474798..475130 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  V9Z43_RS02230 (V9Z43_02230) rpsC 475148..475849 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  V9Z43_RS02235 (V9Z43_02235) rplP 475862..476272 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=857025 V9Z43_RS02190 WP_000338336.1 470915..471382(-) (pilD) [Escherichia coli strain MS 198-1]
MDAALPFLILYACLSTLLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=857025 V9Z43_RS02190 WP_000338336.1 470915..471382(-) (pilD) [Escherichia coli strain MS 198-1]
ATGGACGCTGCCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAACCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGGTTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTTTGCTTATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGTCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368