Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   Q0G00_RS03135 Genome accession   NZ_CP129978
Coordinates   645193..647571 (+) Length   792 a.a.
NCBI ID   WP_029091220.1    Uniprot ID   -
Organism   Brochothrix thermosphacta strain DH-B18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 640193..652571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0G00_RS03120 (Q0G00_03120) - 641768..642910 (+) 1143 WP_301989691.1 cysteine desulfurase family protein -
  Q0G00_RS03125 (Q0G00_03125) mnmA 642925..644043 (+) 1119 WP_029091218.1 tRNA 2-thiouridine(34) synthase MnmA -
  Q0G00_RS03130 (Q0G00_03130) - 644509..645171 (+) 663 WP_301989692.1 tetratricopeptide repeat protein -
  Q0G00_RS03135 (Q0G00_03135) recD2 645193..647571 (+) 2379 WP_029091220.1 ATP-dependent RecD-like DNA helicase Machinery gene
  Q0G00_RS03140 (Q0G00_03140) - 648132..648680 (+) 549 WP_301989693.1 hypothetical protein -
  Q0G00_RS03145 (Q0G00_03145) - 649198..649620 (+) 423 WP_301989694.1 organic hydroperoxide resistance protein -
  Q0G00_RS03150 (Q0G00_03150) - 649649..650083 (+) 435 WP_029091222.1 MarR family transcriptional regulator -
  Q0G00_RS03155 (Q0G00_03155) - 650076..650732 (+) 657 WP_301989695.1 nitroreductase family protein -
  Q0G00_RS03160 (Q0G00_03160) - 650736..651110 (+) 375 WP_029091224.1 DUF1304 domain-containing protein -
  Q0G00_RS03165 (Q0G00_03165) - 651154..651684 (-) 531 WP_029091225.1 hypothetical protein -

Sequence

Protein


Download         Length: 792 a.a.        Molecular weight: 88512.80 Da        Isoelectric Point: 4.8260

>NTDB_id=856793 Q0G00_RS03135 WP_029091220.1 645193..647571(+) (recD2) [Brochothrix thermosphacta strain DH-B18]
MTDTMNTSEGENIPPYVKGNVVTTIFHNATNLFSVLRMEVKESNVEWDDREIVITGYLPELSQEDRYHLEGTVSEHPKYG
RQFQVTTFRKEMPATKAGVSTYLSGEMFKGVGKKTAERIVDILGNDAISRILQDPTVLDQVPKLTTKLKESLAKTLQENE
GIELVMIKLNEMGFGPQLAMRIFQTYQQKTMEVINENPYQLIHDVTGIGFNRADELGQKIGMGGNHPSRLSAALMFTVDS
ESMQNGHVYMEYDETVLATKRLLLSSNGSSVIAENEISDALQELLQNNELVQEETRIYLPSLYHAEKGVAHHLMRLEKAQ
AKRTTFPKSEFLKALGELEERINVTYAPSQSDAIETALNSSTMILTGGPGTGKTTVIKGIVELFAELNGVSLDPSEYKDG
KTFPVVLAAPTGRAAKRMSESTNLPAMTIHRLLGMTGQENKSEDVDRDIEGQLLIIDETSMVDIWLANQLLRAVPTNMQV
IFVGDKDQLPSVGPGQFLKDILKSEVIPTISLTEIYRQAEGSSIIELAHHVKDGVLPADFTENQSDRSFFRCNTQQLSEV
VGQVVKNAVKKGFTSKDIQVLIPMYRGPAGINKMNEELQEILNPNPEGKRKEITYGDVIYRVGDKVLQLVNQPESNVFNG
DMGTIVSIIYAKETVEKQDTLVIEFDQTEVTYLRGDLNQITHAYCCSVHKAQGSEFPIVILPLLKSYYRMLRRDILYTAM
TRSRQFLIMCGEEDAFAQATVRQSDVARQTSLFERLTRTTAELEPVNEAGEYILTPENIHSIDPMIGMVESP

Nucleotide


Download         Length: 2379 bp        

>NTDB_id=856793 Q0G00_RS03135 WP_029091220.1 645193..647571(+) (recD2) [Brochothrix thermosphacta strain DH-B18]
ATGACGGATACAATGAACACATCAGAGGGTGAAAATATACCACCGTATGTTAAAGGCAATGTGGTCACCACCATCTTTCA
TAATGCCACTAACTTGTTTTCTGTGTTGCGTATGGAAGTGAAAGAAAGTAATGTCGAATGGGATGACCGTGAAATTGTCA
TCACCGGTTATCTACCAGAACTTTCACAAGAAGACCGTTATCATTTAGAAGGAACGGTATCAGAACATCCAAAGTATGGA
CGACAGTTTCAGGTCACAACTTTCAGAAAAGAAATGCCTGCTACTAAGGCGGGTGTTTCTACTTATTTATCTGGAGAAAT
GTTCAAAGGTGTCGGTAAAAAGACTGCTGAACGAATTGTCGATATACTAGGTAACGATGCAATTTCACGGATTTTACAAG
ATCCAACTGTGTTAGATCAAGTCCCAAAATTAACAACAAAATTAAAAGAATCATTAGCCAAAACACTTCAAGAAAATGAA
GGCATTGAATTGGTGATGATTAAACTTAATGAAATGGGATTTGGTCCCCAATTAGCGATGCGTATTTTTCAAACATACCA
ACAAAAAACGATGGAAGTTATTAATGAAAATCCGTATCAATTGATTCATGATGTCACAGGTATCGGCTTTAATCGTGCGG
ATGAACTGGGCCAAAAAATTGGTATGGGTGGTAATCATCCTTCTCGTTTAAGTGCAGCACTGATGTTTACGGTTGATTCG
GAAAGTATGCAAAACGGTCATGTTTATATGGAATATGATGAAACGGTATTAGCTACAAAGCGTTTATTATTAAGTAGTAA
TGGCTCTTCTGTCATTGCGGAAAATGAAATTAGTGACGCATTGCAAGAACTATTACAAAATAATGAGCTTGTGCAAGAAG
AGACACGCATCTATTTACCATCGTTGTATCATGCCGAAAAAGGTGTCGCACATCATTTAATGCGACTTGAAAAAGCACAG
GCGAAGCGTACAACTTTTCCGAAGTCAGAGTTTTTAAAAGCGCTTGGTGAATTGGAAGAACGTATTAATGTAACCTATGC
ACCGTCTCAAAGTGATGCGATTGAAACAGCTTTAAATTCGTCAACAATGATTTTAACAGGTGGACCAGGTACAGGTAAAA
CAACTGTTATTAAAGGGATTGTTGAATTGTTTGCTGAATTAAATGGCGTTAGTCTAGATCCAAGTGAATATAAAGATGGA
AAAACATTCCCTGTCGTTTTGGCAGCACCCACGGGACGAGCAGCAAAACGTATGAGTGAATCGACTAATCTACCTGCGAT
GACAATTCATCGTTTATTGGGGATGACAGGTCAAGAAAATAAGTCTGAAGATGTTGATCGTGATATTGAAGGACAATTGC
TTATTATCGATGAAACAAGTATGGTTGATATTTGGCTAGCAAACCAACTGTTGCGAGCTGTGCCAACTAATATGCAGGTT
ATTTTTGTCGGTGATAAAGACCAGTTGCCATCAGTAGGGCCGGGTCAGTTTTTAAAAGATATTTTAAAATCAGAAGTCAT
TCCAACAATTTCTCTAACAGAAATTTATCGACAAGCAGAAGGCTCATCGATTATTGAATTGGCTCACCATGTAAAAGATG
GCGTTTTGCCTGCTGATTTTACTGAAAATCAGTCAGATCGTTCGTTTTTCCGTTGTAATACACAACAGTTGTCAGAAGTA
GTGGGGCAAGTGGTTAAAAATGCCGTGAAAAAAGGTTTTACTTCTAAGGATATTCAAGTGTTGATCCCGATGTATCGTGG
TCCTGCTGGAATTAATAAAATGAATGAAGAGCTGCAGGAAATTTTAAATCCTAACCCTGAGGGTAAGCGGAAAGAAATAA
CCTATGGCGATGTGATTTATCGTGTGGGTGATAAAGTGCTGCAACTTGTTAATCAGCCTGAGAGTAACGTTTTTAATGGT
GATATGGGAACAATTGTATCAATTATCTATGCGAAGGAAACCGTCGAAAAACAAGATACGCTTGTCATTGAATTTGATCA
AACAGAAGTGACATACTTACGCGGTGATTTGAACCAAATTACGCATGCCTATTGTTGCTCTGTGCATAAAGCACAAGGAT
CTGAATTCCCAATTGTTATTTTACCGTTATTAAAAAGTTATTATCGAATGTTACGCCGTGATATTTTATACACAGCGATG
ACTAGAAGTCGGCAATTTTTAATTATGTGTGGCGAAGAAGATGCCTTTGCGCAAGCGACAGTGAGGCAATCAGACGTTGC
GCGACAAACATCGTTATTTGAACGACTTACTCGCACAACTGCAGAGTTAGAACCGGTGAATGAAGCAGGAGAATATATTT
TAACACCTGAAAATATTCATTCAATTGACCCAATGATTGGTATGGTAGAGAGTCCGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)

AAA domain (AAA_30)

(346-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

55.613

97.854

0.544