Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   V9Z38_RS02105 Genome accession   NZ_CP146675
Coordinates   463531..463998 (-) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain MS 69-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 458531..468998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z38_RS02080 (V9Z38_02080) rpsG 458672..459142 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  V9Z38_RS02085 (V9Z38_02085) fusA 459239..461353 (+) 2115 WP_000124700.1 elongation factor G -
  V9Z38_RS02090 (V9Z38_02090) tuf 461424..462608 (+) 1185 WP_000031783.1 elongation factor Tu -
  V9Z38_RS02095 (V9Z38_02095) bfd 462791..462985 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  V9Z38_RS02100 (V9Z38_02100) bfr 463058..463534 (+) 477 WP_000675515.1 bacterioferritin -
  V9Z38_RS02105 (V9Z38_02105) pilD 463531..463998 (-) 468 WP_000340159.1 A24 family peptidase Machinery gene
  V9Z38_RS02110 (V9Z38_02110) rpsJ 464377..464688 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  V9Z38_RS02115 (V9Z38_02115) rplC 464721..465350 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  V9Z38_RS02120 (V9Z38_02120) rplD 465361..465966 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  V9Z38_RS02125 (V9Z38_02125) rplW 465963..466265 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  V9Z38_RS02130 (V9Z38_02130) rplB 466283..467104 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  V9Z38_RS02135 (V9Z38_02135) rpsS 467121..467399 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  V9Z38_RS02140 (V9Z38_02140) rplV 467414..467746 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  V9Z38_RS02145 (V9Z38_02145) rpsC 467764..468465 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  V9Z38_RS02150 (V9Z38_02150) rplP 468478..468888 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=856769 V9Z38_RS02105 WP_000340159.1 463531..463998(-) (pilD) [Escherichia coli strain MS 69-1]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=856769 V9Z38_RS02105 WP_000340159.1 463531..463998(-) (pilD) [Escherichia coli strain MS 69-1]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368