Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V9Z38_RS01355 Genome accession   NZ_CP146675
Coordinates   309415..310179 (-) Length   254 a.a.
NCBI ID   WP_001136218.1    Uniprot ID   -
Organism   Escherichia coli strain MS 69-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 304415..315179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z38_RS01345 (V9Z38_01345) nikR 308205..308606 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  V9Z38_RS01350 (V9Z38_01350) nikE 308612..309418 (-) 807 WP_000173692.1 nickel import ATP-binding protein NikE -
  V9Z38_RS01355 (V9Z38_01355) amiE 309415..310179 (-) 765 WP_001136218.1 nickel import ATP-binding protein NikD Regulator
  V9Z38_RS01360 (V9Z38_01360) nikC 310179..311012 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  V9Z38_RS01365 (V9Z38_01365) nikB 311009..311953 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  V9Z38_RS01370 (V9Z38_01370) nikA 311953..313527 (-) 1575 WP_000493127.1 nickel ABC transporter substrate-binding protein -
  V9Z38_RS01375 (V9Z38_01375) acpT 313638..314225 (-) 588 WP_000285777.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26782.38 Da        Isoelectric Point: 6.6882

>NTDB_id=856764 V9Z38_RS01355 WP_001136218.1 309415..310179(-) (amiE) [Escherichia coli strain MS 69-1]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=856764 V9Z38_RS01355 WP_001136218.1 309415..310179(-) (amiE) [Escherichia coli strain MS 69-1]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCCGCACTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTACACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGATCTCGACGTGGTAGCACAAGCACGCATCCTCGATCTACTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCGCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398