Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V9Z47_RS01575 Genome accession   NZ_CP146670
Coordinates   340992..341756 (-) Length   254 a.a.
NCBI ID   WP_001136211.1    Uniprot ID   -
Organism   Escherichia coli strain MS 21-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 335992..346756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z47_RS01545 (V9Z47_01545) - 336629..337987 (-) 1359 WP_001329802.1 PTS galactitol transporter subunit IIC -
  V9Z47_RS01550 (V9Z47_01550) - 338061..338342 (-) 282 WP_000084021.1 PTS sugar transporter subunit IIB -
  V9Z47_RS01555 (V9Z47_01555) - 338339..338812 (-) 474 WP_001572025.1 PTS sugar transporter subunit IIA -
  V9Z47_RS01560 (V9Z47_01560) - 338837..339583 (-) 747 WP_001329803.1 GntR family transcriptional regulator -
  V9Z47_RS01565 (V9Z47_01565) nikR 339782..340183 (-) 402 WP_001189000.1 nickel-responsive transcriptional regulator NikR -
  V9Z47_RS01570 (V9Z47_01570) nikE 340189..340995 (-) 807 WP_000173687.1 nickel import ATP-binding protein NikE -
  V9Z47_RS01575 (V9Z47_01575) amiE 340992..341756 (-) 765 WP_001136211.1 nickel import ATP-binding protein NikD Regulator
  V9Z47_RS01580 (V9Z47_01580) nikC 341756..342589 (-) 834 WP_001008967.1 nickel ABC transporter permease subunit NikC -
  V9Z47_RS01585 (V9Z47_01585) nikB 342586..343530 (-) 945 WP_000947080.1 nickel ABC transporter permease subunit NikB -
  V9Z47_RS01590 (V9Z47_01590) nikA 343530..345104 (-) 1575 WP_000493131.1 nickel ABC transporter substrate-binding protein -
  V9Z47_RS01595 (V9Z47_01595) acpT 345215..345802 (-) 588 WP_000285792.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.45 Da        Isoelectric Point: 6.9016

>NTDB_id=856680 V9Z47_RS01575 WP_001136211.1 340992..341756(-) (amiE) [Escherichia coli strain MS 21-1]
MPQQIELRNIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=856680 V9Z47_RS01575 WP_001136211.1 340992..341756(-) (amiE) [Escherichia coli strain MS 21-1]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGTGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGTGCCCTGCGCGGCATCAAG
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTACACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGTTGGAAAACGCCGCGCGCGTGT
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAATGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398