Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QUR78_RS05320 Genome accession   NZ_CP129948
Coordinates   1049953..1051794 (-) Length   613 a.a.
NCBI ID   WP_390836499.1    Uniprot ID   -
Organism   Arcobacter cryaerophilus gv. pseudocryaerophilus strain DSM 115955     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1044953..1056794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUR78_RS05305 (QUR78_05310) - 1045411..1046538 (+) 1128 WP_390836495.1 iron-containing alcohol dehydrogenase -
  QUR78_RS05310 (QUR78_05315) - 1046574..1048850 (-) 2277 WP_066405544.1 methyl-accepting chemotaxis protein -
  QUR78_RS05315 (QUR78_05320) - 1048929..1049960 (-) 1032 WP_390836498.1 alanine racemase -
  QUR78_RS05320 (QUR78_05325) uvrC 1049953..1051794 (-) 1842 WP_390836499.1 excinuclease ABC subunit UvrC Machinery gene
  QUR78_RS05325 (QUR78_05330) - 1051917..1054367 (+) 2451 WP_390836501.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 71336.56 Da        Isoelectric Point: 9.1839

>NTDB_id=856680 QUR78_RS05320 WP_390836499.1 1049953..1051794(-) (uvrC) [Arcobacter cryaerophilus gv. pseudocryaerophilus strain DSM 115955]
MNLEEKLKELPNDSGVYQYFDENGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLSPRIYKMISETTFVEWIVVPNEHDA
LILENSLIKQLKPKYNVLLRDDKTYPYIYVDLNEDFPRLEITRKIEKGKNIKYFGPYSSGAKDMLDSIYEIVPLVQKKSC
IKGKSACLFYQIGKCKAPCEQKITKEEYKKILDEALSYIYNKSKLLSKLKEKMKIYSDDFRFEDALNLRDRVKTIEKSEI
KTGIDLATNEDLDIFAIKSASKKAVIVRMFIRDGKLASSNYDFIKINDDLEFDLNEAYKRAIVNYYSNELPIIPKEIIIA
DEILDLDDIEEFLYKRFNKKIKVINPKIDKKASIVKIALNNCDELLRIEASKNQTTIYEELKELFCLQTTPSLIESFDNS
HLMGQATVGAMIVWNENLGSFDKKAFRHYNLESKDEYSQMREMLIRRVESFSKNPAPDLWIIDGGETLLKLAFDIVQSIG
VNLDIIAISKQKVDAKAYRAKGNAKDIVHFRKNGEYKSLNLLTSDKRLQFIQRQRDEAHRFAISFHKKQKRKEDKEISFL
QINGIGEAKIKKLLLYFGEFEKIKNASLDELKAVLNEVDSKNIFDYFRKEENG

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=856680 QUR78_RS05320 WP_390836499.1 1049953..1051794(-) (uvrC) [Arcobacter cryaerophilus gv. pseudocryaerophilus strain DSM 115955]
ATGAATTTAGAAGAGAAATTAAAAGAGTTACCAAATGATTCTGGTGTTTATCAATATTTTGATGAAAACGGTCATTTACT
ATATATTGGAAAAGCAAAAGTTTTAAAAAATAGAGTAAAATCTTATTTCAAATTTACTCCAAAACTCTTACCTGCTGATA
AACTAAGTCCACGAATATATAAAATGATTAGTGAAACTACTTTTGTAGAGTGGATTGTTGTTCCAAATGAACATGATGCT
TTAATACTTGAAAACTCTTTAATAAAACAACTAAAACCAAAATACAATGTACTTTTAAGAGATGATAAAACCTATCCATA
TATTTATGTTGATTTAAATGAAGATTTTCCAAGACTTGAAATAACAAGAAAAATAGAAAAAGGTAAAAATATAAAATATT
TTGGTCCATACTCAAGTGGAGCCAAAGATATGTTAGATAGCATATATGAAATAGTTCCTTTGGTACAAAAAAAATCTTGT
ATAAAAGGAAAAAGTGCTTGTCTATTTTACCAAATAGGAAAATGTAAAGCTCCTTGTGAACAAAAAATAACAAAAGAAGA
GTATAAAAAAATTTTAGATGAAGCTTTAAGCTATATATACAATAAATCAAAACTTTTATCAAAACTAAAAGAGAAGATGA
AAATATATTCAGATGATTTTCGTTTTGAGGATGCTTTAAATTTAAGAGATAGAGTAAAAACTATTGAAAAATCTGAAATT
AAAACAGGAATAGATTTAGCAACAAATGAAGATTTAGATATATTTGCTATAAAATCTGCTAGTAAAAAAGCTGTGATTGT
AAGAATGTTTATAAGAGATGGAAAACTTGCATCTTCAAATTATGATTTTATAAAAATAAATGATGATTTAGAGTTTGATT
TAAATGAAGCATACAAAAGAGCAATTGTAAACTACTACTCAAATGAACTTCCAATTATCCCAAAAGAGATTATTATAGCT
GATGAAATTTTGGATTTAGATGACATTGAAGAGTTTTTATATAAAAGATTTAATAAAAAAATAAAAGTAATAAATCCAAA
AATAGATAAAAAAGCTAGTATTGTAAAAATTGCATTAAACAACTGTGATGAACTTCTACGAATTGAAGCTTCAAAAAATC
AAACAACTATATATGAAGAGTTAAAAGAACTATTTTGTCTACAAACAACTCCTAGCTTAATAGAAAGTTTTGACAACTCA
CATTTGATGGGACAAGCAACAGTTGGAGCTATGATTGTTTGGAATGAAAATTTAGGCTCTTTTGACAAAAAAGCTTTTAG
ACACTACAACCTTGAATCAAAAGATGAATATTCACAAATGAGAGAGATGCTAATAAGAAGAGTTGAAAGCTTTTCAAAAA
ATCCTGCTCCTGATTTATGGATTATTGATGGTGGAGAAACTTTGCTAAAACTAGCATTTGATATTGTACAAAGTATTGGG
GTAAATTTAGATATTATTGCAATTTCAAAACAAAAAGTAGATGCTAAAGCATATAGAGCAAAAGGAAATGCGAAAGATAT
AGTCCATTTTAGAAAAAATGGTGAATACAAAAGCTTAAATCTTCTTACAAGTGATAAAAGATTACAGTTTATTCAAAGAC
AAAGAGATGAAGCCCATAGATTTGCTATAAGTTTTCATAAAAAACAAAAAAGAAAAGAGGATAAAGAGATATCCTTTTTA
CAAATAAATGGAATAGGTGAAGCGAAAATCAAAAAACTTCTTCTATATTTTGGAGAGTTTGAAAAGATAAAAAATGCAAG
TTTAGATGAGCTAAAAGCTGTTTTAAATGAAGTTGATTCAAAAAATATATTTGATTATTTTAGAAAGGAAGAGAATGGCT
AG

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-543)

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.846

97.227

0.504