Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QZL34_RS01430 Genome accession   NZ_CP129930
Coordinates   295938..296663 (-) Length   241 a.a.
NCBI ID   WP_069537396.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate BM24A     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 290938..301663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL34_RS01405 - 292057..292548 (+) 492 WP_005458943.1 type II secretion system protein M -
  QZL34_RS01410 - 292550..293311 (+) 762 WP_021486905.1 type II secretion system protein N -
  QZL34_RS01415 cysQ 293597..294424 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QZL34_RS01420 nudE 294466..295035 (-) 570 WP_021448936.1 ADP compounds hydrolase NudE -
  QZL34_RS01425 nfuA 295256..295840 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  QZL34_RS01430 comF 295938..296663 (-) 726 WP_069537396.1 ComF family protein Machinery gene
  QZL34_RS01435 bioH 296748..297515 (+) 768 WP_005489494.1 pimeloyl-ACP methyl ester esterase BioH -
  QZL34_RS01440 - 297639..298103 (+) 465 WP_005459035.1 hypothetical protein -
  QZL34_RS01445 - 298239..300560 (-) 2322 WP_024703491.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27736.89 Da        Isoelectric Point: 8.9991

>NTDB_id=856376 QZL34_RS01430 WP_069537396.1 295938..296663(-) (comF) [Vibrio parahaemolyticus isolate BM24A]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=856376 QZL34_RS01430 WP_069537396.1 295938..296663(-) (comF) [Vibrio parahaemolyticus isolate BM24A]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTATGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485