Detailed information NTG0856346

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q0M94_RS04740
• Genome accession: NZ_CP129906
• Coordinates: 892215..893369 (-)
• Length: 384 a.a.
• NCBI ID: WP_407540709.1
• Uniprot ID: -
• Organism: Deinococcus radiomollis strain PO-04-20-132
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 887215..898369

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q0M94_RS04710 (Q0M94_04710)	-	887332..888297 (-)	966	WP_407540703.1	ring-cleaving dioxygenase	-
Q0M94_RS04715 (Q0M94_04715)	-	888361..888981 (-)	621	WP_407540704.1	hypothetical protein	-
Q0M94_RS04720 (Q0M94_04720)	-	889032..889976 (-)	945	WP_407540705.1	hypothetical protein	-
Q0M94_RS04725 (Q0M94_04725)	rplS	890191..890754 (+)	564	WP_407540706.1	50S ribosomal protein L19	-
Q0M94_RS04730 (Q0M94_04730)	-	890970..891956 (+)	987	WP_407540707.1	malate dehydrogenase	-
Q0M94_RS04735 (Q0M94_04735)	-	892014..892160 (-)	147	WP_407540708.1	hypothetical protein	-
Q0M94_RS04740 (Q0M94_04740)	pilD	892215..893369 (-)	1155	WP_407540709.1	prepilin peptidase	Machinery gene
Q0M94_RS04745 (Q0M94_04745)	-	893395..894381 (-)	987	WP_407540710.1	GNAT family N-acetyltransferase	-
Q0M94_RS04750 (Q0M94_04750)	-	894378..895394 (-)	1017	WP_407540711.1	GNAT family N-acetyltransferase	-
Q0M94_RS04755 (Q0M94_04755)	-	895391..896389 (-)	999	WP_407540712.1	GNAT family N-acetyltransferase	-
Q0M94_RS04760 (Q0M94_04760)	-	896467..897132 (+)	666	WP_407540713.1	PIG-L deacetylase family protein	-
Q0M94_RS04765 (Q0M94_04765)	-	897243..898181 (+)	939	WP_407540714.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 40697.44 Da
• Isoelectric Point: 7.0407

>NTDB_id=856346 Q0M94_RS04740 WP_407540709.1 892215..893369(-) (pilD) [Deinococcus radiomollis strain PO-04-20-132]
MIPDALFTVFAAVLGLLIGSFSNVLIWRLPRRESVNFPPSHCPNCDHALAPIDLVPVLSWAVLGGKCRYCKAPISPRYPV
VELVTGAAYALLSVVFPFSQVGASLLGLCLLFTLLLVASVIDQETYTIPDEISLPGAAIGLLFGLVNARSGAAGAVGLPV
FAEALRGMLLGAGLLIAIDLLGSWVMRRFRERAFPDFPLGYQQIALSLLAGAWLGVWWGVGVGVLSAVANLLARRTFRVP
EWLTLGGTLLSLVLTSTGVGPSLILMVQGALAAAGGMALLCGLYWWLSPLITKTPEDDSDDYDASAMGFGDVKLAALIGA
FLGWEKLIVAVVFAVLAGAVLGVLQLLIFKENRLKFGPYLAIGAVLALLFGTQLVQMYRGLFGL

Nucleotide

• Length: 1155 bp

>NTDB_id=856346 Q0M94_RS04740 WP_407540709.1 892215..893369(-) (pilD) [Deinococcus radiomollis strain PO-04-20-132]
GTGATTCCAGACGCTCTCTTCACCGTGTTCGCCGCCGTGCTGGGGCTGCTGATCGGCTCTTTTTCCAACGTGCTGATCTG
GCGGCTGCCCCGGCGCGAGAGCGTCAATTTTCCGCCCTCGCACTGCCCGAACTGCGACCACGCGCTCGCCCCCATCGACT
TGGTGCCGGTGCTGTCGTGGGCCGTGCTCGGCGGAAAATGCCGCTACTGCAAGGCCCCGATCAGCCCGCGTTACCCCGTC
GTGGAACTGGTCACCGGGGCCGCCTACGCGCTGCTGAGCGTGGTGTTTCCGTTCTCGCAGGTGGGGGCCAGCCTGCTGGG
GCTGTGCCTGCTGTTCACGCTGCTGCTGGTGGCCTCGGTCATCGACCAGGAAACCTACACCATTCCCGACGAGATTTCCC
TGCCGGGCGCGGCCATCGGGCTGCTGTTCGGGTTGGTGAACGCCCGCAGCGGGGCGGCGGGCGCGGTGGGCCTCCCGGTG
TTCGCGGAAGCCCTACGAGGCATGCTGCTGGGTGCGGGCCTGCTGATCGCCATCGACCTGCTGGGGTCGTGGGTGATGCG
GCGCTTTCGTGAACGCGCCTTCCCGGATTTTCCGTTGGGCTATCAGCAGATCGCGCTCTCCTTGCTGGCGGGCGCATGGC
TGGGTGTGTGGTGGGGCGTCGGTGTAGGTGTGCTGAGCGCCGTTGCCAACCTGCTGGCCCGCCGCACTTTCCGCGTTCCC
GAGTGGCTGACGCTCGGCGGCACGTTGCTCAGTCTGGTGCTCACGAGCACCGGTGTCGGCCCCAGCCTGATCCTGATGGT
GCAGGGCGCACTGGCCGCCGCCGGGGGCATGGCGCTGCTGTGCGGGCTGTACTGGTGGCTGAGCCCGCTGATCACCAAGA
CGCCCGAAGACGACAGCGACGACTACGACGCCAGCGCGATGGGCTTCGGCGACGTGAAGCTCGCGGCTTTGATCGGCGCA
TTCCTGGGCTGGGAAAAGCTGATCGTGGCGGTGGTATTCGCGGTGCTGGCGGGCGCGGTGCTGGGCGTGCTGCAACTGCT
GATCTTCAAGGAGAACCGCCTGAAGTTCGGTCCGTACCTGGCGATAGGCGCGGTGCTGGCGCTGCTGTTCGGCACTCAAC
TGGTGCAGATGTACAGAGGGCTGTTCGGCCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (110-230)

• Type IV leader peptidase family (Peptidase_A24) (235-343)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-95)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	60.052	100	0.607