Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   QZN14_RS01020 Genome accession   NZ_CP129875
Coordinates   166493..167425 (+) Length   310 a.a.
NCBI ID   WP_000138503.1    Uniprot ID   -
Organism   Streptococcus agalactiae COH1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 161493..172425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZN14_RS01000 - 161706..163364 (+) 1659 WP_001118750.1 peptide ABC transporter substrate-binding protein -
  QZN14_RS01005 - 163479..164393 (+) 915 WP_000598967.1 ABC transporter permease -
  QZN14_RS01010 - 164403..165434 (+) 1032 WP_000764053.1 ABC transporter permease -
  QZN14_RS01015 oppD 165447..166496 (+) 1050 WP_000410289.1 ABC transporter ATP-binding protein Regulator
  QZN14_RS01020 amiF 166493..167425 (+) 933 WP_000138503.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 34869.74 Da        Isoelectric Point: 6.8964

>NTDB_id=855973 QZN14_RS01020 WP_000138503.1 166493..167425(+) (amiF) [Streptococcus agalactiae COH1]
MTENRKKLVEVKNVSLTFNKGKANEVRAIDNVSFDIYEGEVFGLVGESGSGKTTVGRSILKLYDISDGEITFNGEVISHL
KGKALHSFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLAKSKSDRDSKVQALLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGTSDD
VYNKPIHPYTKSLLSAIPEPDPESERQRVHQPYNPAIEQDGQERQMHEITPGHFVLSTPQEAEEYKKQIL

Nucleotide


Download         Length: 933 bp        

>NTDB_id=855973 QZN14_RS01020 WP_000138503.1 166493..167425(+) (amiF) [Streptococcus agalactiae COH1]
ATGACTGAAAATCGAAAAAAATTAGTTGAAGTCAAAAATGTTTCTTTGACCTTCAATAAAGGAAAAGCTAATGAAGTGAG
AGCAATTGATAATGTTAGTTTTGACATTTATGAAGGTGAAGTGTTTGGATTAGTTGGGGAATCTGGATCAGGAAAGACAA
CCGTTGGACGTTCAATTTTAAAACTTTATGATATTTCTGATGGCGAAATTACCTTTAATGGAGAAGTGATCTCACATCTG
AAAGGTAAAGCATTACATAGTTTTCGTAAAGACGCTCAGATGATTTTTCAGGATCCTCAGGCTAGCTTAAACGGCCGTAT
GAAGATTCGTGATATCGTAGCAGAAGGTTTAGACATACATAAATTAGCTAAATCAAAATCAGATCGTGATAGTAAAGTTC
AGGCCCTATTAGATCTTGTAGGGTTAAATAAAGATCATTTAACACGTTATCCGCATGAATTTTCAGGTGGACAACGACAA
CGTATCGGGATTGCACGTGCTTTAGCAGTAGAGCCTAAATTTATCATTGCTGATGAACCAATATCTGCCTTAGATGTTTC
AATCCAAGCACAAGTTGTTAATTTAATGCAAAAATTGCAAAGAGAACAAGGATTGACTTATTTGTTTATCGCACATGATT
TGTCTATGGTAAAATACATTTCAGATCGTATCGGTGTTATGCATTGGGGGAAACTGTTAGAAGTTGGAACATCTGATGAT
GTTTATAACAAACCAATCCACCCTTATACGAAGAGTCTATTATCAGCTATTCCAGAACCAGATCCGGAGAGTGAACGTCA
ACGTGTTCACCAGCCGTATAATCCAGCTATTGAGCAAGACGGACAAGAACGTCAAATGCACGAGATTACACCTGGTCATT
TTGTTTTATCTACACCCCAAGAAGCTGAAGAATATAAAAAACAAATATTATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-267)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.221

99.355

0.539
  amiF Streptococcus thermophilus LMG 18311

53.896

99.355

0.535
  amiF Streptococcus salivarius strain HSISS4

54.098

98.387

0.532