Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   V8957_RS05265 Genome accession   NZ_CP146556
Coordinates   1144884..1145351 (-) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain B1.H1.39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1139884..1150351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8957_RS05240 (V8957_05240) rpsG 1140025..1140495 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  V8957_RS05245 (V8957_05245) fusA 1140592..1142706 (+) 2115 WP_000124700.1 elongation factor G -
  V8957_RS05250 (V8957_05250) tuf 1142777..1143961 (+) 1185 WP_000031783.1 elongation factor Tu -
  V8957_RS05255 (V8957_05255) bfd 1144144..1144338 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  V8957_RS05260 (V8957_05260) bfr 1144411..1144887 (+) 477 WP_000675515.1 bacterioferritin -
  V8957_RS05265 (V8957_05265) pilD 1144884..1145351 (-) 468 WP_000340159.1 A24 family peptidase Machinery gene
  V8957_RS05270 (V8957_05270) rpsJ 1145730..1146041 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  V8957_RS05275 (V8957_05275) rplC 1146074..1146703 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  V8957_RS05280 (V8957_05280) rplD 1146714..1147319 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  V8957_RS05285 (V8957_05285) rplW 1147316..1147618 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  V8957_RS05290 (V8957_05290) rplB 1147636..1148457 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  V8957_RS05295 (V8957_05295) rpsS 1148474..1148752 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  V8957_RS05300 (V8957_05300) rplV 1148767..1149099 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  V8957_RS05305 (V8957_05305) rpsC 1149117..1149818 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  V8957_RS05310 (V8957_05310) rplP 1149831..1150241 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=855456 V8957_RS05265 WP_000340159.1 1144884..1145351(-) (pilD) [Escherichia coli strain B1.H1.39]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=855456 V8957_RS05265 WP_000340159.1 1144884..1145351(-) (pilD) [Escherichia coli strain B1.H1.39]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368