Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FIA75_RS06525 Genome accession   NZ_CP146512
Coordinates   1176331..1176798 (-) Length   155 a.a.
NCBI ID   WP_000340167.1    Uniprot ID   A7ZSL1
Organism   Escherichia coli strain EH53     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1171331..1181798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIA75_RS06500 (FIA75_06505) rpsG 1171472..1171942 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  FIA75_RS06505 (FIA75_06510) fusA 1172039..1174153 (+) 2115 WP_000124700.1 elongation factor G -
  FIA75_RS06510 (FIA75_06515) tuf 1174224..1175408 (+) 1185 WP_000031783.1 elongation factor Tu -
  FIA75_RS06515 (FIA75_06520) bfd 1175591..1175785 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  FIA75_RS06520 (FIA75_06525) bfr 1175858..1176334 (+) 477 WP_000675515.1 bacterioferritin -
  FIA75_RS06525 (FIA75_06530) pilD 1176331..1176798 (-) 468 WP_000340167.1 A24 family peptidase Machinery gene
  FIA75_RS06530 (FIA75_06535) rpsJ 1177177..1177488 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  FIA75_RS06535 (FIA75_06540) rplC 1177521..1178150 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  FIA75_RS06540 (FIA75_06545) rplD 1178161..1178766 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  FIA75_RS06545 (FIA75_06550) rplW 1178763..1179065 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  FIA75_RS06550 (FIA75_06555) rplB 1179083..1179904 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  FIA75_RS06555 (FIA75_06560) rpsS 1179921..1180199 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  FIA75_RS06560 (FIA75_06565) rplV 1180214..1180546 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  FIA75_RS06565 (FIA75_06570) rpsC 1180564..1181265 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  FIA75_RS06570 (FIA75_06575) rplP 1181278..1181688 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16984.17 Da        Isoelectric Point: 8.0293

>NTDB_id=855296 FIA75_RS06525 WP_000340167.1 1176331..1176798(-) (pilD) [Escherichia coli strain EH53]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDCLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=855296 FIA75_RS06525 WP_000340167.1 1176331..1176798(-) (pilD) [Escherichia coli strain EH53]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACTGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZSL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361