Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V8690_RS35250 Genome accession   NZ_CP146350
Coordinates   7579029..7579982 (-) Length   317 a.a.
NCBI ID   WP_338784108.1    Uniprot ID   -
Organism   Streptomyces sp. DG1A-41     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 7574029..7584982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8690_RS35240 (V8690_35240) - 7576463..7577992 (-) 1530 WP_338784106.1 glycoside hydrolase family 32 protein -
  V8690_RS35245 (V8690_35245) - 7577989..7579032 (-) 1044 WP_338784107.1 ATP-binding cassette domain-containing protein -
  V8690_RS35250 (V8690_35250) amiE 7579029..7579982 (-) 954 WP_338784108.1 ABC transporter ATP-binding protein Regulator
  V8690_RS35255 (V8690_35255) - 7579986..7580906 (-) 921 WP_338784109.1 ABC transporter permease -
  V8690_RS35260 (V8690_35260) - 7580920..7581897 (-) 978 WP_338784110.1 ABC transporter permease -
  V8690_RS35265 (V8690_35265) - 7581991..7583658 (-) 1668 WP_338784111.1 ABC transporter substrate-binding protein -
  V8690_RS35270 (V8690_35270) - 7583748..7584770 (-) 1023 WP_338784112.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34968.46 Da        Isoelectric Point: 6.3554

>NTDB_id=855185 V8690_RS35250 WP_338784108.1 7579029..7579982(-) (amiE) [Streptomyces sp. DG1A-41]
MEPVLEVNGLRVEYRGDGRTVVGADDVSFSIGAGEVFGLAGESGCGKSTIANAVMRLLKPPAEITAGSIRFQGRDVLALD
TRELRAFRWREIAMVFQSAMNSLNPVLTIGEQIVDIFTTHERMKKRAARERAGELLQLVGIDPGRLKAYPHQLSGGMRQR
VVIAMAVALRPRLLIMDEPTTALDVVVQQEIMAQIRDLQRELGFSILFITHDMSLMVELSDRMGVMYGGRIVELADAKDL
FANPLHPYTEALMNAFPPLTGPRQELTGLFDAPRTADSCGFHVRCPEDRSDCSMNIPDLREVAPGRWVARSLPGAPR

Nucleotide


Download         Length: 954 bp        

>NTDB_id=855185 V8690_RS35250 WP_338784108.1 7579029..7579982(-) (amiE) [Streptomyces sp. DG1A-41]
ATGGAACCCGTACTTGAGGTGAACGGCCTGCGCGTCGAATACCGCGGTGACGGACGCACCGTCGTTGGCGCCGACGACGT
CTCCTTCTCCATCGGCGCCGGAGAGGTCTTCGGCCTCGCCGGTGAGTCCGGCTGCGGCAAGTCGACCATCGCCAACGCGG
TGATGCGGCTGCTCAAGCCCCCGGCGGAGATCACCGCGGGCAGCATCCGCTTCCAAGGCCGGGACGTCCTCGCCCTGGAC
ACACGGGAGCTGCGCGCCTTCCGCTGGCGGGAGATCGCCATGGTCTTCCAGTCGGCGATGAACTCCCTCAACCCCGTCCT
GACCATCGGCGAGCAGATCGTCGACATCTTCACCACCCACGAGCGGATGAAGAAGCGGGCCGCGCGGGAGCGGGCCGGCG
AGCTGCTTCAGCTGGTCGGCATCGACCCGGGAAGGCTGAAGGCGTACCCGCACCAGCTGTCCGGCGGCATGCGTCAGCGC
GTGGTCATCGCCATGGCCGTCGCGCTGCGCCCCCGGCTGCTGATCATGGACGAGCCGACCACCGCGCTCGACGTGGTCGT
GCAGCAGGAGATCATGGCGCAGATCCGCGATCTCCAGCGGGAGCTGGGCTTCTCCATCCTCTTCATCACCCACGACATGT
CCCTGATGGTCGAGCTGTCGGATCGCATGGGCGTGATGTACGGCGGACGGATCGTCGAACTCGCCGACGCCAAGGACCTG
TTCGCCAATCCGCTCCACCCCTACACCGAGGCTCTGATGAACGCCTTCCCGCCGCTGACCGGCCCGCGCCAGGAGCTCAC
CGGCCTCTTCGACGCCCCGCGCACCGCCGACAGCTGCGGCTTCCACGTCCGCTGTCCTGAGGACCGCTCGGACTGCTCCA
TGAACATCCCCGACCTGCGCGAGGTCGCGCCCGGCCGCTGGGTGGCCCGCAGCCTTCCAGGAGCCCCCCGATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(232-292)

ABC transporter (ABC_tran)

(25-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

37.742

97.792

0.369
  amiE Streptococcus thermophilus LMG 18311

37.987

97.161

0.369
  amiE Streptococcus thermophilus LMD-9

37.987

97.161

0.369