Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   V8690_RS06965 Genome accession   NZ_CP146350
Coordinates   1479932..1481287 (-) Length   451 a.a.
NCBI ID   WP_338776518.1    Uniprot ID   -
Organism   Streptomyces sp. DG1A-41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1474932..1486287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8690_RS06945 (V8690_06945) alaS 1475338..1478007 (-) 2670 WP_338776509.1 alanine--tRNA ligase -
  V8690_RS06950 (V8690_06950) - 1478007..1478378 (-) 372 WP_338776511.1 hypothetical protein -
  V8690_RS06955 (V8690_06955) - 1478388..1478819 (-) 432 WP_059420356.1 DUF948 domain-containing protein -
  V8690_RS06960 (V8690_06960) rpsD 1479006..1479620 (-) 615 WP_031116607.1 30S ribosomal protein S4 -
  V8690_RS06965 (V8690_06965) rarA 1479932..1481287 (-) 1356 WP_338776518.1 replication-associated recombination protein A Machinery gene
  V8690_RS06970 (V8690_06970) - 1481344..1482000 (-) 657 WP_338776519.1 vitamin K epoxide reductase family protein -
  V8690_RS06975 (V8690_06975) - 1482143..1483009 (+) 867 WP_338776521.1 ABC transporter ATP-binding protein -
  V8690_RS06980 (V8690_06980) - 1483006..1483851 (+) 846 WP_338776523.1 ABC transporter permease -
  V8690_RS06985 (V8690_06985) - 1483827..1485043 (+) 1217 Protein_1393 sensor histidine kinase -
  V8690_RS06990 (V8690_06990) - 1485040..1485666 (+) 627 WP_338776525.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48221.62 Da        Isoelectric Point: 6.2997

>NTDB_id=855121 V8690_RS06965 WP_338776518.1 1479932..1481287(-) (rarA) [Streptomyces sp. DG1A-41]
MEPDLFTAAAEERQEKEPSSSPLAVRMRPRTLDEVVGQRHLLKPGSPLRRLVGEGASGPAGPSSVILWGPPGTGKTTLAY
VVSKATNARFVELSAITAGVKEVRSVIDGARRASGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDIKGLVQRALTDERGLKGAVTLPEETESHLLRIAGGDARRALTALEAAAGAALDKGETE
IGLTTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNAL
PIAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIGAALEDVRKGLAGPVPAHLRDSHYKGATKLGHGQGYVY
PHDLPEGIAAQQYAPDALKDREYYEPTRHGAEARYADAVEWTRKNLGRKRS

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=855121 V8690_RS06965 WP_338776518.1 1479932..1481287(-) (rarA) [Streptomyces sp. DG1A-41]
GTGGAGCCCGACCTGTTCACCGCCGCAGCAGAAGAACGCCAGGAGAAGGAGCCGTCCAGCAGCCCCCTGGCGGTGCGGAT
GCGCCCGCGCACCCTCGACGAGGTCGTGGGCCAGCGGCATCTGCTGAAGCCGGGCTCGCCCCTGCGCAGACTGGTCGGCG
AGGGCGCCTCCGGCCCGGCCGGCCCCTCCTCGGTGATCCTCTGGGGCCCGCCCGGCACGGGCAAGACCACCCTGGCGTAC
GTCGTCTCCAAGGCCACCAACGCCCGCTTCGTCGAACTGTCGGCGATCACCGCGGGTGTCAAGGAGGTCCGCTCGGTCAT
CGACGGCGCCCGTCGCGCCTCCGGCGGGTACGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTGCTCCCGGCCGTCGAGAACCGCTGGGTGACACTGATCGCTGCGACGACGGAGAACCCCTACTTC
TCGGTGATCTCGCCCCTGCTGTCCCGCTCCCTCCTCCTCACCCTCGAACCGCTCACGGACGACGACATCAAGGGCCTCGT
CCAGCGAGCCCTGACCGACGAGCGCGGCCTCAAAGGCGCCGTCACCCTCCCCGAGGAGACCGAGAGCCACCTCCTGCGCA
TCGCCGGCGGCGACGCCCGCCGCGCCCTGACGGCCCTGGAGGCGGCCGCCGGAGCCGCCCTGGACAAGGGCGAGACGGAG
ATCGGCCTGACCACCCTGGAGGAGACGGTCGACCGGGCCGCCGTGAAGTACGACCGTGACGGCGACCAGCACTACGACGT
GGCCAGCGCCCTGATCAAGTCCATCCGCGGCTCCGACGTCGACGCCGCCCTGCACTACCTGGCCCGGATGATCGAGGCCG
GCGAGGACCCCCGCTTCATCGCCCGCCGTCTGATGATCTCCGCCAGCGAGGACATCGGCCTCGCCGACCCGAACGCGTTG
CCGATCGCGGTCGCCGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCGGAGGCCGCCCTCACCCTCAGCCACGCCACCAT
CGCCCTCGCCCTGGCCCCCAAGTCCAACGCCGCGACCACCGCGATCGGCGCCGCCCTGGAGGACGTCCGCAAGGGACTGG
CCGGGCCCGTGCCCGCGCACCTTCGCGACAGTCACTACAAGGGCGCCACCAAGCTCGGCCACGGCCAGGGCTACGTCTAC
CCGCACGACCTGCCCGAGGGAATCGCCGCCCAGCAGTACGCCCCGGACGCCCTCAAGGACCGCGAGTACTACGAGCCGAC
CCGGCACGGCGCGGAGGCCCGCTACGCGGACGCGGTCGAGTGGACCCGGAAGAACCTCGGTCGAAAGCGGTCCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-276)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.111

96.009

0.424