Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   V6M96_RS02155 Genome accession   NZ_CP146250
Coordinates   464388..464855 (-) Length   155 a.a.
NCBI ID   WP_000381746.1    Uniprot ID   Q8X892
Organism   Escherichia coli strain L26     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 459388..469855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6M96_RS02130 (V6M96_02130) rpsG 459529..459999 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  V6M96_RS02135 (V6M96_02135) fusA 460096..462210 (+) 2115 WP_000124700.1 elongation factor G -
  V6M96_RS02140 (V6M96_02140) tuf 462281..463465 (+) 1185 WP_000031783.1 elongation factor Tu -
  V6M96_RS02145 (V6M96_02145) bfd 463648..463842 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  V6M96_RS02150 (V6M96_02150) bfr 463915..464391 (+) 477 WP_000675515.1 bacterioferritin -
  V6M96_RS02155 (V6M96_02155) pilD 464388..464855 (-) 468 WP_000381746.1 A24 family peptidase Machinery gene
  V6M96_RS02160 (V6M96_02160) rpsJ 465234..465545 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  V6M96_RS02165 (V6M96_02165) rplC 465578..466207 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  V6M96_RS02170 (V6M96_02170) rplD 466218..466823 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  V6M96_RS02175 (V6M96_02175) rplW 466820..467122 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  V6M96_RS02180 (V6M96_02180) rplB 467140..467961 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  V6M96_RS02185 (V6M96_02185) rpsS 467978..468256 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  V6M96_RS02190 (V6M96_02190) rplV 468271..468603 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  V6M96_RS02195 (V6M96_02195) rpsC 468621..469322 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  V6M96_RS02200 (V6M96_02200) rplP 469335..469745 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17099.29 Da        Isoelectric Point: 8.1343

>NTDB_id=855036 V6M96_RS02155 WP_000381746.1 464388..464855(-) (pilD) [Escherichia coli strain L26]
MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVIGWDSLLIGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=855036 V6M96_RS02155 WP_000381746.1 464388..464855(-) (pilD) [Escherichia coli strain L26]
ATGGACACTACCCTTCCCTTTCTAATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTCATCCTGATGGTTTAGCCG
ATGCGTTATGGGGGGCAATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGCGCCTGGCATTCATGGGCCTTCTTACCACGGCTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAATCATTAAAAAACCCGCTGC
CTTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTATAGGCTGGGATAGTTTGCTGATAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8X892

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

43.478

89.032

0.387