Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QN217_RS09195 Genome accession   NZ_CP129675
Coordinates   2241999..2243768 (-) Length   589 a.a.
NCBI ID   WP_369341134.1    Uniprot ID   -
Organism   Bifidobacterium fermentum strain WK048_4_13     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2236999..2248768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN217_RS09175 (QN217_09135) - 2238182..2238379 (+) 198 WP_369341137.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QN217_RS09180 (QN217_09140) - 2238354..2238665 (+) 312 WP_369341136.1 HigA family addiction module antitoxin -
  QN217_RS09185 (QN217_09145) - 2239003..2239857 (+) 855 WP_369341135.1 SDR family oxidoreductase -
  QN217_RS09190 (QN217_09150) rcrQ 2240098..2241948 (-) 1851 WP_394854715.1 ABC transporter ATP-binding protein Regulator
  QN217_RS09195 (QN217_09155) rcrP 2241999..2243768 (-) 1770 WP_369341134.1 ABC transporter ATP-binding protein Regulator
  QN217_RS09200 (QN217_09160) - 2243936..2244457 (-) 522 WP_369341133.1 MarR family winged helix-turn-helix transcriptional regulator -
  QN217_RS09205 (QN217_09165) - 2244850..2246436 (+) 1587 WP_369341132.1 amino acid permease -
  QN217_RS09210 (QN217_09170) ilvC 2246850..2247905 (-) 1056 WP_369343085.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 64561.62 Da        Isoelectric Point: 5.0818

>NTDB_id=854869 QN217_RS09195 WP_369341134.1 2241999..2243768(-) (rcrP) [Bifidobacterium fermentum strain WK048_4_13]
MIRICKYLSKLEIGELILGVALVISQVWFDLKLPDYMSDVTRIVETPNSKVSEVWTAGGKMLLISLGSIACAIATGFIAA
RVAATFTQRLRSLEFKQVESFSTQELGNFSTASLITRSTNDITQIQMFITMGLLLIVRAPVMAVWAVLKIAGKGFEWTVA
TGVAVAFLVVAIVILMSMVGPKFRSMQRLTDNINLVARENLTGLRVVRAYNAEDYQEEKFDHANDDLTSTQLFTNRAIAV
LMPLMNTVLNGLMLAVYWIGAYLIEQATLGDKLTLFSNMVVFSSYSVQVIMGFLLMSMVFVLLPRANVSANRILEVLDTP
ISITDGTRDGGEQDLEGTVEFRNMGFKYPDAKHNVLDDISFKVDKGQTIAFIGATGSGKSTLINLVPRFYDASSGQVLVD
GVNVKDYKLSALRDKIGYVPQESFLFRGTVESNIAYGAKADAVSDETREEGVKAAASIAHATEFVEKMPEGFDSPIAQSG
SNVSGGQKQRLSIARAVWSKPEILIFDDSFSALDFKTDREVRDALARETAGSTVMIVAQRIGTIMNADKIVVLDQGRIVG
MGTHKELLDSCEIYRQIAESQLSAKELVD

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=854869 QN217_RS09195 WP_369341134.1 2241999..2243768(-) (rcrP) [Bifidobacterium fermentum strain WK048_4_13]
GTGATTCGTATATGTAAATATCTTTCAAAGCTTGAGATCGGGGAACTCATCCTTGGGGTTGCCCTCGTGATCTCACAGGT
CTGGTTCGACCTGAAACTGCCCGACTATATGTCCGACGTTACGCGAATCGTCGAGACGCCGAATTCAAAGGTTTCGGAAG
TCTGGACGGCGGGCGGCAAGATGCTGCTCATCTCGCTAGGCTCCATTGCGTGCGCCATCGCGACGGGCTTCATCGCAGCC
CGGGTTGCCGCAACGTTCACCCAGCGCCTGCGTTCGCTCGAGTTCAAGCAAGTGGAATCATTCTCAACCCAGGAGTTGGG
CAATTTCTCGACGGCAAGCCTGATCACTCGCTCGACCAACGACATCACGCAGATTCAGATGTTCATCACGATGGGATTGC
TGCTGATCGTGCGCGCGCCTGTCATGGCCGTATGGGCAGTCCTGAAGATCGCTGGAAAAGGTTTCGAGTGGACCGTCGCA
ACGGGCGTTGCGGTCGCATTCCTGGTCGTTGCCATCGTCATCCTGATGAGCATGGTCGGACCGAAGTTCCGTAGCATGCA
GCGGCTTACCGATAACATCAACCTCGTCGCACGCGAGAATCTGACCGGTCTCAGAGTCGTCCGTGCATACAATGCGGAGG
ACTATCAGGAAGAGAAGTTCGATCATGCGAACGACGATCTGACCTCGACCCAGCTCTTCACCAACCGTGCCATAGCCGTG
CTGATGCCGTTGATGAACACGGTGCTCAACGGTCTGATGCTCGCCGTCTATTGGATTGGCGCCTATCTCATCGAGCAGGC
GACTCTGGGCGACAAGCTCACCCTCTTCTCGAACATGGTCGTGTTCTCGAGCTATTCGGTGCAGGTGATCATGGGCTTCC
TGCTGATGAGCATGGTGTTCGTGCTGCTGCCTCGTGCGAACGTCTCGGCAAACCGCATTCTCGAAGTGCTCGATACCCCG
ATTTCCATAACCGACGGCACCAGGGATGGTGGCGAACAAGACCTGGAAGGTACGGTGGAATTCCGCAATATGGGCTTCAA
ATACCCCGACGCCAAGCACAACGTCCTCGATGACATCAGCTTCAAGGTGGACAAGGGCCAGACCATAGCGTTCATCGGAG
CGACCGGCTCGGGAAAGTCGACGCTCATCAACCTCGTCCCGCGATTCTATGATGCCTCATCCGGTCAGGTGCTCGTCGAT
GGCGTTAACGTGAAGGATTACAAGCTCAGCGCACTTCGCGACAAGATCGGTTACGTGCCTCAGGAATCATTCCTCTTCCG
AGGAACCGTCGAGTCGAATATCGCCTATGGTGCAAAGGCGGATGCAGTCTCGGACGAAACGAGGGAAGAGGGCGTCAAGG
CTGCGGCTTCGATAGCGCATGCAACCGAATTCGTTGAAAAGATGCCAGAAGGATTCGACTCTCCGATCGCACAGTCCGGA
TCGAACGTGTCAGGCGGCCAGAAGCAGCGGCTCTCGATTGCCCGAGCGGTATGGAGCAAGCCGGAGATACTGATCTTCGA
TGATTCGTTCTCGGCGCTCGACTTCAAGACTGACCGAGAGGTTCGCGACGCGCTCGCGCGGGAAACGGCCGGCAGCACGG
TCATGATCGTCGCGCAGCGCATAGGAACCATAATGAATGCCGACAAAATCGTCGTGCTTGACCAGGGACGCATCGTTGGC
ATGGGAACGCATAAGGAATTGCTGGATTCTTGCGAGATATACAGGCAGATAGCCGAAAGCCAGCTCAGTGCAAAGGAATT
GGTGGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-509)

ABC transporter transmembrane region (ABC_membrane)

(60-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.748

100

0.496