Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QYS54_RS04795 Genome accession   NZ_CP129633
Coordinates   914820..917177 (+) Length   785 a.a.
NCBI ID   WP_014458149.1    Uniprot ID   A0A8D3WV14
Organism   Priestia aryabhattai strain S2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 909820..922177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYS54_RS04775 (QYS54_04775) - 911177..911593 (+) 417 WP_013059297.1 Rrf2 family transcriptional regulator -
  QYS54_RS04780 (QYS54_04780) - 911617..912759 (+) 1143 WP_301861417.1 cysteine desulfurase family protein -
  QYS54_RS04785 (QYS54_04785) mnmA 912866..913978 (+) 1113 WP_014458148.1 tRNA 2-thiouridine(34) synthase MnmA -
  QYS54_RS04790 (QYS54_04790) - 914136..914795 (+) 660 WP_013085089.1 tetratricopeptide repeat protein -
  QYS54_RS04795 (QYS54_04795) recD2 914820..917177 (+) 2358 WP_014458149.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QYS54_RS04800 (QYS54_04800) - 917319..917510 (+) 192 WP_013059292.1 hypothetical protein -
  QYS54_RS04805 (QYS54_04805) - 917536..917670 (+) 135 WP_013059291.1 YrzQ family protein -
  QYS54_RS04810 (QYS54_04810) - 917785..918846 (+) 1062 WP_013059290.1 AI-2E family transporter -
  QYS54_RS04815 (QYS54_04815) alaS 919235..921868 (+) 2634 WP_116742518.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88805.18 Da        Isoelectric Point: 5.0229

>NTDB_id=854661 QYS54_RS04795 WP_014458149.1 914820..917177(+) (recD2) [Priestia aryabhattai strain S2]
MNEEQVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQTIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=854661 QYS54_RS04795 WP_014458149.1 914820..917177(+) (recD2) [Priestia aryabhattai strain S2]
ATGAACGAAGAACAAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCAATTGTAACGGTCTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTTGTTA
CAGGCTATTTTCCTAAGTTGAATGAAGATGAAGTATACACGTTTTACGGGGACTTCAAAGAGCATCCAAAGTTCGGCCTG
CAGTTTCATGTTGAACAGTTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTATCTAGCGATTTATT
TCACGGAATCGGTAAAAAAACCGCTGAAAATATTGTAGACGCCCTAGGAGAACGCGCTATCTTTCGTATTTTACAAAATG
AGTCTGTGCTAAAAGAGGTGCCGAGGCTTTCAGCCGACAAGGCAGAAGCTTTAGTCACTCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACGGACCTCGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAACCCTTATCAGCTCGTAGAAGATATTCAAGGGATTGGTTTTAGCCGGGCCGATG
AACTTGGAAAGAGACTTGGTATGGCAACCAATCATCCTGATCGTTTGCGTGCGGGTATTTTATACGTCATTGAGCAAGAA
TGCAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGGAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATTATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTTTATGCTGAAAAAGGACTGGTTAAAGCTATTCAAACAATTATGGCTCAAACGCAGTAC
GAAGAGCAGTTTCCAGAATCAGAATTTTTACTAGCTCTGGGTGAGCTAGAAGAGCGATTAGACGTGCAATATGCACCGTC
TCAGCGCAAGGGTATACAAACCGCTTTAATGTCTCCAATGCTTCTTTTAACAGGTGGACCAGGTACAGGGAAAACAACAG
TTATTAAAGGAATAGTCGAACTCTATGCAGAACTTCATGGATGTTCGTTAAATCCAGGGGACTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTCGCACCTACTGGACGAGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCGGCGGTTACGAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGATCATAATGAGGAGAATCCAATTGACGGAAAATTACTGATTG
TGGATGAAGTATCAATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAATCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTGAGTTCAGAAGTAGTTCCTAC
CGTCCGCCTGACGGATGTATACAGGCAAGCGGAAGGATCATCAATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCGAGGCAGCAAGGAGATCGTTCCTTTATTCGTTGTCAAGGACAGCACATCACAAACGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTTTAGCTCCTATGTATAAAGGTCCTGC
AGGGATTGATAAACTGAATGAAGTTCTTCAGGAATTATTTAACCCGGCTTCTGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGACATGGGA
GAAATCGTCTCGGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAATGAAGT
AACTTACACAAAGCAAGACTTTAATCAAATAACCCATGCATACTGCTGTTCCATCCATAAATCACAGGGAAGTGAATTTC
CTATTGTTGTACTTCCGATTGTCAAAAGCTATTACCGAATGCTGCGACGCAATTTGCTTTATACCGCCGTTACGCGAAGT
AAACAATTTTTAATTTTATGCGGCGAAGACGAAGCGTTTCAGCTTGGAGTCAGCCGAAATGAAGACAGCGTCCGACAAAC
GAACCTACAGCCCTTGCTTCGAGAAAGCTTAGATAACGATATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTTATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-551)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.939

99.618

0.637