Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QY868_RS03275 Genome accession   NZ_CP129528
Coordinates   669976..670497 (+) Length   173 a.a.
NCBI ID   WP_002829316.1    Uniprot ID   A0AAN5YAY2
Organism   Pediococcus acidilactici strain A1602     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 664976..675497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY868_RS03265 (QY868_03265) gyrA 666947..669466 (+) 2520 WP_008841972.1 DNA gyrase subunit A -
  QY868_RS03270 (QY868_03270) rpsF 669652..669939 (+) 288 WP_002829317.1 30S ribosomal protein S6 -
  QY868_RS03275 (QY868_03275) ssb 669976..670497 (+) 522 WP_002829316.1 single-stranded DNA-binding protein Machinery gene
  QY868_RS03280 (QY868_03280) rpsR 670527..670763 (+) 237 WP_002829315.1 30S ribosomal protein S18 -
  QY868_RS03285 (QY868_03285) - 670976..672973 (+) 1998 WP_002829314.1 DHH family phosphoesterase -
  QY868_RS03290 (QY868_03290) rplI 672979..673431 (+) 453 WP_005918668.1 50S ribosomal protein L9 -
  QY868_RS03295 (QY868_03295) dnaB 673481..674878 (+) 1398 WP_002829312.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18874.39 Da        Isoelectric Point: 4.6207

>NTDB_id=854037 QY868_RS03275 WP_002829316.1 669976..670497(+) (ssb) [Pediococcus acidilactici strain A1602]
MINRAVLVGRLTRDPELRYTSSGAAVVSFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSLLESRSASERRQENEGFNNGQSAPSQSSAGNPFDSGQANNNGAASQPNNSNPNDPFANG
GQSIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=854037 QY868_RS03275 WP_002829316.1 669976..670497(+) (ssb) [Pediococcus acidilactici strain A1602]
ATGATTAATCGTGCCGTACTAGTTGGACGTTTAACAAGAGATCCTGAACTACGATATACAAGTAGTGGCGCTGCCGTAGT
TAGTTTTACCGTGGCGGTTAACCGTCAGTTTACTAACTCACAGGGTGAACGCGAAGCGGATTTCATCAACTGTGTAATGT
GGCGGAAAGCGGCGGAAAACTTCGCCAACTTCACGCGTAAGGGCTCTCTAGTAGGTATCGACGGTCGGATCCAAACCCGT
TCGTACGAAAACCAACAAGGACAACGAGTATACGTTACCGAAGTTGTTGCGGATAACTTCTCACTTCTTGAATCCCGTTC
GGCTTCCGAACGCCGTCAAGAAAATGAAGGCTTCAACAACGGTCAATCTGCCCCTTCACAATCATCTGCTGGAAATCCTT
TTGACAGTGGTCAAGCGAATAACAATGGTGCTGCATCGCAGCCTAACAATTCGAACCCGAACGATCCGTTTGCAAATGGC
GGACAGTCAATTGATATTTCTGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

69.318

100

0.705
  ssbA Bacillus subtilis subsp. subtilis str. 168

60

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

61.272

0.376