Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   QYM01_RS04010 Genome accession   NZ_CP129527
Coordinates   847893..848771 (+) Length   292 a.a.
NCBI ID   WP_206159004.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain BJ-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 842893..853771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM01_RS03980 (QYM01_03980) - 843088..843963 (+) 876 WP_012515431.1 F0F1 ATP synthase subunit gamma -
  QYM01_RS03985 (QYM01_03985) atpD 844128..845534 (+) 1407 WP_021320644.1 F0F1 ATP synthase subunit beta -
  QYM01_RS03990 (QYM01_03990) - 845547..845963 (+) 417 WP_012515433.1 F0F1 ATP synthase subunit epsilon -
  QYM01_RS03995 (QYM01_03995) - 846097..846333 (+) 237 WP_206159003.1 DUF1146 family protein -
  QYM01_RS04000 (QYM01_04000) murA 846398..847669 (+) 1272 WP_037578679.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QYM01_RS04005 (QYM01_04005) - 847673..847861 (+) 189 WP_012678107.1 DNA-directed RNA polymerase subunit beta -
  QYM01_RS04010 (QYM01_04010) endA 847893..848771 (+) 879 WP_206159004.1 DNA/RNA non-specific endonuclease Machinery gene
  QYM01_RS04015 (QYM01_04015) - 848785..848943 (+) 159 WP_206159005.1 hypothetical protein -
  QYM01_RS04020 (QYM01_04020) pheS 849681..850724 (+) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  QYM01_RS04025 (QYM01_04025) pheT 850914..853319 (+) 2406 WP_301900531.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31907.03 Da        Isoelectric Point: 10.2448

>NTDB_id=853989 QYM01_RS04010 WP_206159004.1 847893..848771(+) (endA) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MIKKKKDIRLLNAFLALLLVLGTGYLVGHDDLVADNPIKQVYQRIFGSDPQQAGLPKASRDWDTPSKALADSVMTATIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKLVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRRALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVASSQP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=853989 QYM01_RS04010 WP_206159004.1 847893..848771(+) (endA) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATGATCAAAAAGAAGAAAGACATCAGGCTGCTTAATGCCTTTTTAGCGCTCTTGCTTGTTCTTGGAACAGGTTATTTGGT
AGGACATGATGACCTAGTAGCTGATAACCCGATCAAGCAGGTCTACCAAAGGATTTTTGGCTCTGACCCGCAGCAAGCTG
GGCTACCGAAGGCAAGCCGAGACTGGGACACTCCCTCCAAGGCCTTGGCAGATTCGGTCATGACAGCCACCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACTGGTGCCTATATCATTAATCATAATAAAACGACGCTAAATGCAAAGGT
AGCCAGTCTCCCCTATGCCAATAATAAAACAAAGCTGGTGCAAGGGCAAAGCGTTCCTACCGTAGCCAATGCCCTGCTAA
CTAAGTCAACCCGACAATATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAGGGGTTAAAGGGAAGGTATAGTCACGCAGTGGATAGAGGGCATCTTCTAGGCTATGCGCTTGTTGGCGGGCTAAA
AGGCTTTGATGCCTCAATGGCTAATCCCAGTAATATTGCTACTCAAACCGCATGGGCTAACCAAGCAGCCAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAGAGCCCTAGATAGCAATAAGCGTGTCCGCTATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGCAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTACAGATTGATTATCAAACAGGTCAGATCACTGTAGCCTCTTCCCAGCCTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(116-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.257

77.397

0.521
  endA Streptococcus pneumoniae D39

67.257

77.397

0.521
  endA Streptococcus pneumoniae R6

67.257

77.397

0.521
  endA Streptococcus pneumoniae TIGR4

67.257

77.397

0.521