Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QYM42_RS00705 Genome accession   NZ_CP129526
Coordinates   142421..143209 (+) Length   262 a.a.
NCBI ID   WP_003129722.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZZ-2     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 137421..148209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM42_RS00680 (QYM42_00680) - 137789..138580 (+) 792 WP_033899177.1 DNA/RNA non-specific endonuclease -
  QYM42_RS00685 (QYM42_00685) - 138746..138955 (+) 210 WP_010905160.1 hypothetical protein -
  QYM42_RS00690 (QYM42_00690) - 138967..139206 (+) 240 WP_003129719.1 hypothetical protein -
  QYM42_RS00695 (QYM42_00695) - 139402..140985 (+) 1584 WP_081213312.1 APC family permease -
  QYM42_RS00700 (QYM42_00700) - 141054..142268 (+) 1215 WP_003129721.1 pyridoxal phosphate-dependent aminotransferase -
  QYM42_RS00705 (QYM42_00705) codY 142421..143209 (+) 789 WP_003129722.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QYM42_RS00710 (QYM42_00710) gatC 143771..144076 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  QYM42_RS00715 (QYM42_00715) gatA 144076..145536 (+) 1461 WP_015425676.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  QYM42_RS00720 (QYM42_00720) - 145540..146142 (+) 603 WP_023163651.1 NUDIX hydrolase -
  QYM42_RS00725 (QYM42_00725) gatB 146182..147615 (+) 1434 WP_251900026.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29128.46 Da        Isoelectric Point: 4.5254

>NTDB_id=853913 QYM42_RS00705 WP_003129722.1 142421..143209(+) (codY) [Lactococcus lactis strain ZZ-2]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=853913 QYM42_RS00705 WP_003129722.1 142421..143209(+) (codY) [Lactococcus lactis strain ZZ-2]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATCTTCCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACCATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCTTTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462