Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   V6U69_RS00355 Genome accession   NZ_CP145867
Coordinates   66773..68041 (+) Length   422 a.a.
NCBI ID   WP_048790915.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 61773..73041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS00330 (V6U69_00330) - 63631..63936 (-) 306 WP_002887079.1 DUF1292 domain-containing protein -
  V6U69_RS00335 (V6U69_00335) ruvX 64042..64461 (-) 420 WP_002887078.1 Holliday junction resolvase RuvX -
  V6U69_RS00340 (V6U69_00340) - 64461..64727 (-) 267 WP_002885737.1 IreB family regulatory phosphoprotein -
  V6U69_RS00345 (V6U69_00345) - 64829..66277 (-) 1449 WP_410533885.1 IS1182 family transposase -
  V6U69_RS00350 (V6U69_00350) rpmB 66415..66603 (-) 189 WP_002885786.1 50S ribosomal protein L28 -
  V6U69_RS00355 (V6U69_00355) rarA 66773..68041 (+) 1269 WP_048790915.1 replication-associated recombination protein A Machinery gene
  V6U69_RS00370 (V6U69_00370) - 68483..69622 (-) 1140 WP_003091984.1 tyrosine-type recombinase/integrase -
  V6U69_RS00375 (V6U69_00375) - 69624..69812 (-) 189 WP_000369785.1 DUF3173 domain-containing protein -
  V6U69_RS00380 (V6U69_00380) - 69824..70801 (-) 978 WP_410533888.1 replication initiation protein -
  V6U69_RS00385 (V6U69_00385) - 70847..71029 (-) 183 WP_410533890.1 hypothetical protein -
  V6U69_RS00390 (V6U69_00390) - 71237..71749 (+) 513 WP_410533892.1 helix-turn-helix domain-containing protein -
  V6U69_RS00395 (V6U69_00395) - 71968..72483 (+) 516 WP_410533894.1 DUF308 domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46600.06 Da        Isoelectric Point: 5.8803

>NTDB_id=853910 V6U69_RS00355 WP_048790915.1 66773..68041(+) (rarA) [Streptococcus salivarius strain KSS10]
MPDNLALRMRPRTISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVMLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
GVLEDKERGFDFDVQLDEDALDFIATATNGDLRSAYNSLDLAVMSTPASEDGLRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKVGFPEARILIANVV
VDLALSPKSNSAYMAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=853910 V6U69_RS00355 WP_048790915.1 66773..68041(+) (rarA) [Streptococcus salivarius strain KSS10]
ATGCCAGATAATCTTGCTCTACGCATGCGTCCACGTACAATTTCAGAGGTGATTGGTCAGAAGCATTTGGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAAGCGAATATGCTGTCGTCAATGATTCTCTACGGACCACCAGGAATCGGGAAGACCT
CAATAGCTAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACCTTTAATGCTACTGTTGATAGCAAGAAACGCCTG
CAGGAAATTGCGGAAGAGGCTAAATTTTCAGGTGGCTTAGTTATGCTTCTAGACGAGATTCATCGTTTGGATAAAGCTAA
ACAAGACTTTTTATTGCCACTCTTAGAGAATGGCAATATTATCATGATTGGGGCTACAACGGAGAATCCGTTTTTTTCTG
TCACACCAGCCATCCGTAGTCGTGTACAAATATTTGAGTTGGAACCACTCTCTAACGAGGATATTAAGGAAGCTATCCTA
GGTGTTCTAGAGGACAAGGAGCGTGGCTTTGACTTTGATGTCCAGTTAGATGAGGATGCTCTAGATTTTATTGCTACGGC
TACTAATGGTGATTTACGTTCGGCTTATAATTCCTTAGATTTAGCTGTCATGTCGACACCAGCTTCAGAAGATGGGCTTC
GCCATATTACTTTAGATACAGTGGAAAATAGTTTACAACGTAGCTATATCACCATGGATAAAGACGGTGATGGACACTAT
GATGTGCTTTCTGCTTTGCAAAAATCTATTCGAGGCTCTGATGTTAATGCCAGTCTTCACTATGCAGCACGTTTGGTTGA
AGCAGGAGATCTCCCTAGTCTAGCACGGCGCTTGACTGTGATTGCGTACGAGGATATTGGTTTAGCTAATCCTGATGCGC
AAGTTCACACGGTTACAGCTTTGGAAGCTGCACAGAAAGTAGGTTTCCCAGAGGCGCGTATTTTGATTGCCAATGTAGTT
GTTGACTTAGCTTTATCTCCTAAGTCGAATTCGGCTTATATGGCTATGGATGCTGCCTTGGCAGACCTTAGAAAATCAGG
GAATTTACCTATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTACAAGT
ATCCCCATGCTTATCCTGAAAAGTGGGTCAAGCAACAATACCTTCCAGATAAATTAAGAGGTGTAAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGGATTGATAAGTTATCTAGGTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.905

99.289

0.595