Detailed information NTG0853888

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: V6U68_RS08850
• Genome accession: NZ_CP145866
• Coordinates: 1924115..1926619 (+)
• Length: 834 a.a.
• NCBI ID: WP_410531661.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain KSS9
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1919115..1931619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6U68_RS08830 (V6U68_08810)	-	1921334..1921876 (-)	543	WP_145516544.1	CvpA family protein	-
V6U68_RS08835 (V6U68_08815)	zapA	1921873..1922187 (-)	315	WP_004183554.1	cell division protein ZapA	-
V6U68_RS08840 (V6U68_08820)	rnhC	1922504..1923394 (+)	891	WP_195435400.1	ribonuclease HIII	-
V6U68_RS08845 (V6U68_08825)	lepB	1923413..1924054 (+)	642	WP_004183556.1	signal peptidase I	-
V6U68_RS08850 (V6U68_08830)	recD/recD2/recDB	1924115..1926619 (+)	2505	WP_410531661.1	ATP-dependent RecD-like DNA helicase	Machinery gene
V6U68_RS08855 (V6U68_08835)	-	1926671..1926997 (-)	327	WP_037599077.1	AzlD domain-containing protein	-
V6U68_RS08860 (V6U68_08840)	-	1926984..1927676 (-)	693	WP_347095447.1	AzlC family ABC transporter permease	-
V6U68_RS08865 (V6U68_08845)	tsaD	1927728..1928741 (-)	1014	WP_002891900.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
V6U68_RS08870 (V6U68_08850)	rimI	1928741..1929196 (-)	456	WP_045769118.1	ribosomal protein S18-alanine N-acetyltransferase	-
V6U68_RS08875 (V6U68_08855)	tsaB	1929156..1929842 (-)	687	WP_179969558.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
V6U68_RS08880 (V6U68_08860)	-	1930103..1930333 (+)	231	WP_002884752.1	DNA-dependent RNA polymerase subunit epsilon	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 93860.11 Da
• Isoelectric Point: 4.4225

>NTDB_id=853888 V6U68_RS08850 WP_410531661.1 1924115..1926619(+) (recD/recD2/recDB) [Streptococcus salivarius strain KSS9]
MQEFYFSGTIERVIFENASNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGEDYTFWGQLTNHPKYGEQLQMTRYERS
KPSASGLIKYFASDNFKGIGKKTAERIVEIYGEDPIDKILEDPSELEQIPNLSKVNREAFVAKLKINYGAEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEEHPYLLVEEIQGIGFKMADQLAERLGIASDAPERLRAALIHCLLEASMEEGDTYIEA
KALLERTIILLESARPIELDPALVANQLTNLIQEDKVQNVETKIFDNTLYFAEQGIYTHLTRIMKDQPDVSSEDKILDSL
EGVEEELGITYDQVQKDAIIKALQSKFFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSDLPIILAAPTGRAARRMNEL
TQLPSATIHRHLGLNSEDDFKTLEDYLDCDLIIIDEFSMVDTWLANQLFESISDSTQVIIVGDQDQLPSVGPGQVLADLL
QIDNLPKVSLTKIFRQSEDSTIVTLASQMRQGQLPADFTEKKADRSYFEANANHIPQMVPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPKEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIVAFDYAVHNEG
AKRNTYLIQRFEQTYTQAVDKSVEKIVKNEATDASNQTKKENNESSEPLENKDISGNLNPSPALINTYSQPVDKSVNKPV
QTEENYRLTEDNWSTIDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=853888 V6U68_RS08850 WP_410531661.1 1924115..1926619(+) (recD/recD2/recDB) [Streptococcus salivarius strain KSS9]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAACGCGTCATTTTCGAAAACGCTAGTAATTTTTTTCGTATCTTACTCTT
AGAAATTGACGAAACAGACAGTGATTTTGAAGACTACGAAATCATTGTCACAGGAACTATGGGGGATGTCATGGAGGGTG
AAGACTATACCTTCTGGGGCCAACTAACCAATCACCCTAAATATGGGGAACAGCTACAAATGACCCGCTACGAGCGTTCA
AAACCTTCTGCCAGCGGTCTTATCAAATATTTTGCCAGCGACAATTTCAAAGGAATCGGTAAGAAAACGGCCGAGCGTAT
TGTCGAAATTTACGGAGAAGACCCTATTGACAAGATTCTCGAGGATCCTAGCGAGTTAGAGCAGATCCCCAACCTCTCCA
AGGTCAATCGAGAAGCCTTTGTTGCTAAGTTAAAAATCAATTATGGAGCCGAGCAAATCCTGTCCAAACTTTCTAGCTAT
GGACTCACACCAAAGGCCGCCTCACAAATTTTCAACCAATATAAGGAAGAGTCACTAAACCTTATTGAGGAACACCCTTA
TCTATTAGTAGAGGAGATTCAAGGAATCGGTTTTAAAATGGCTGACCAACTAGCTGAACGTCTTGGAATTGCTAGTGATG
CTCCTGAGCGTTTACGAGCAGCCTTGATTCATTGTCTACTAGAAGCCAGTATGGAAGAAGGCGATACCTACATAGAAGCC
AAAGCCTTGCTTGAACGGACCATCATTCTTTTGGAAAGTGCTCGTCCGATTGAACTTGACCCCGCCTTGGTCGCTAACCA
ATTAACCAATCTTATCCAAGAGGATAAGGTGCAAAATGTAGAGACTAAAATCTTTGATAATACCCTATATTTTGCGGAAC
AGGGCATCTATACCCACCTAACTCGTATCATGAAGGACCAACCTGACGTCAGCTCTGAAGACAAAATCTTAGACAGCCTT
GAAGGGGTGGAAGAGGAGCTTGGTATTACTTATGATCAGGTTCAAAAAGATGCCATTATCAAAGCCCTACAAAGCAAGTT
CTTCATTCTGACAGGTGGTCCCGGAACAGGGAAAACCACTGTTATTAACGGCATTATTAAAACCTATGCTGACCTTCATG
GCCTAGATCTCAAAAAGTCTGATTTACCTATTATTTTAGCAGCACCAACGGGACGGGCTGCTCGTCGGATGAACGAACTC
ACCCAACTCCCTAGCGCCACTATTCATAGACATTTAGGCCTCAATAGCGAGGACGATTTTAAGACCTTAGAGGACTATCT
CGATTGCGATTTGATTATCATCGACGAGTTCTCTATGGTTGATACTTGGTTGGCCAATCAACTCTTTGAAAGTATCTCTG
ATTCAACCCAAGTTATCATTGTGGGTGACCAAGACCAACTACCTTCCGTAGGCCCTGGCCAAGTCTTGGCTGACCTTTTG
CAGATTGATAACTTGCCTAAAGTTTCCCTAACCAAAATTTTCAGACAATCCGAGGATTCCACTATCGTTACCCTAGCTAG
CCAGATGCGCCAAGGCCAACTACCCGCTGATTTCACAGAGAAAAAGGCTGACCGCTCTTACTTTGAGGCCAATGCCAACC
ATATTCCACAGATGGTTCCTAAAATCGTCTCTGCTGCGATAAAGAGTGGGATTGCAGCTCAGGATGTTCAGATTCTAGCC
CCCATGTACCGAGGACAGGCTGGTATTAACAATCTCAATACCATTATGCAAGACCTACTTAATCCTAAAGAAAAGGCCAA
TCAGTTCGCCTTTAATGATATCTTCTTCCGCAAAAACGACAAGATTCTCCATCTGGTCAACGATACAGAACTCAATGTCT
TCAATGGCGACATCGGAATCATTACTGATCTCATTCCTGGTAAATATACTGAAAGCAAACAGGACGAAATTTACATGTCC
TTCGACGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCTATGTCAATCCACAAATC
CCAAGGGAGTGAGTTCCCAGTCGTTATCCTTCCCATCACACGCCAAAGTGGGCGTATGCTACAACGTAACCTCATTTACA
CCGCAATCACACGCGCCAAGAGTAAACTAGTCATGCTGGGGGAAATCGTAGCCTTCGATTATGCTGTTCACAACGAGGGA
GCTAAACGAAATACTTATCTCATCCAACGTTTTGAACAAACTTATACACAAGCTGTTGATAAGTCTGTCGAAAAGATTGT
TAAAAACGAGGCAACAGACGCATCCAATCAAACAAAAAAGGAAAACAACGAATCCTCAGAACCCCTTGAAAACAAAGACA
TTTCGGGAAATCTAAATCCATCTCCAGCTCTTATTAACACTTATTCACAACCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACCGAAGAAAACTATCGTTTAACTGAAGATAATTGGTCAACTATAGATCCAATGATTGGTCTCAGTGAAGACGATAT
CGCTGCTTTTTTTAACAATAACTAA

Domains

Predicted by InterProScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• AAA domain (AAA_30) (331-523)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	45.114	89.568	0.404